RnoINT0086829 @ rn6
Intron Retention
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117784497-117786872:-
Coord C1 exon
chr7:117786859-117786872
Coord A exon
chr7:117784642-117786858
Coord C2 exon
chr7:117784497-117784641
Length
2217 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTGGACTTTGCTACCCAGGCA
3' ss Score
5.12
Exon sequences
Seq C1 exon
CGCCACTGGAGCAG
Seq A exon
GTGAGGGGGCGGGGAGGGGGGGAGATCCTGGCCCAAGGTCACCGAGCTTGGGGGCGGGATCGGAACCCTCTAGGTTCTGACTGCTGCACCAAGAAAAGGTCATAGGATCTGGCAATGGGAAGGGGTGGAAACCACACCCTCAATGAGCAGGCTCGGACCCACTGGAACGGGAGGGGGCGGTTAAGGGAGGTAGTGCTGGTTAAAAGCGCCGGATCGCAAGGGCTGCCAGAGACCTCAGCTGGGCCTGACAGAGAACACAGGGCTCCTCTCCACCTTCTTCCCCCCTAGATAGCCACCCAGGAGACCGACACCCCACGTCTGCCCAGGATTAGAGGATCATGTCCTGATAAAAGGATTTTTGGGCTTGTCTAGTAAGGGGCCCTTATTCCTGTCATGACTATCTTGCACTGATGCACATCTGGGCTTCTGCATAAGCAGCAGCTCTGATCCCTAATGCACAGATCAAGGCTTTGCTACTGAAGGCTGAACAGATGCGCGAGGCCTGGAGCCAGGGACCAACCATTCGTGCACCAGGAAATAAAACCCAGAAACCTAGCAAACGTCCCCACTTCTTGGGGCTCCACATGCCCTGAGATATCTAGGAGCTGCCTTTGCCTGCGCCAAAGCTATTCCATTAAAACTTTACTGCTGTACTGCTTCATCTCTTTTGACTTTAAATGATCATGTGACTTCCAATTGGTGCAAAATTGAGACAAACACCAAGGCCACTTAGTACAGTTCAACTTGACTCAGAGCAAAGAAGACCTGGTGAATAAGCAGGTATTAAAACACTAAAGCTTGCCAAATGAGCCTGGACACTTGAGAACAGTGCGCCCTTGGTCCTATTTTCTTTAACCTCAAAAAACAGGTTTCTCAGCTTCGGGTAGCTCCGTTAAAACTGAGCCCATTGTGGCTAGAACTAGACCCTAGTCCTTCTGTCCTTAAGTTCCCAGGCACATGCATTAACCTACTGTAGAACACATTTCTTAAGAGTTTCAGAGGTCACCGCTCCCACATTCTACTTAGAAAGCTAGATACCCTGTTGTGATGATAGGAGAGGAACTCAGTGGTATATTGTGTGCTTAAGCCTGTGCTTGATGTGTGGGAGAAACTGAGGTCAATCCCCAGACGGGAGGAAAGAAGAAAATTAAAAACCAGTGATGACCTAAGGTTTCCTCCCACATCCCAGCCAGGACACACACCTTCATCTACTCCAAAAACACAGACCTGTTTGGAACCAGCTTTGGGGCCAAGGCATGGGCTCTGGACTGTTTTTCCTGCTGTTTGTCTTATCCCTCCGTTCTCTAAAACTTACCTGAGAAAGCTAAGCGTGATGGGGCCGCCCCCTGTGACCTTGCCACTTGGGAGCTTGATTACAAGTGTCTCAGGTTCAAGTATAGCAAGACCCTGACTCAACAAATTAGAAGGAACAATCAGGTGTGGAGGCTCAGGTCTCTAATGCCAGTACTAGAGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGCCAGCCCGCTTTACACAGAGATTGAGGATAGTCATGGACACATAGAAAGAGACCCTGTCTCAGTTGGGGTAGGGCTGGGGGTGAATTCCCAGCACCCACATGGTGGCTCACAACCATCCTAAATTCAGTTCCAGGGGATCCGATGCCCTCTTCTGACTTCTGAGGATCCCAGGTTTGCATGAGATGCACACACATACATGCAAAGCAAAACACTCATGCACAGAAAATATTTTTTGAAAAGGAGAGAACAGGAAGTAAGCTAGACATAGTGCCATAGGCCTTTAATCTCAGCACCCAGAGGCAGACAGACATCTCTGGGCCAACCAGAGAAACAGTAGACCCTCCCCAAAAGGAAATAAAATGTATGAGTTAACCCCCAAGAAAAGCCTAACTCTTGGTGAGCTTTCTACCCACCTCTGTCCCTACAACAGGAGGATTATGGACCACACCAAGCTATGCATTGAGCACCATGTCTCCCCAAATCCCCTTCAGATCATGACAAATGAACCATAAGGTGGGATCGAATGGGTCCAGGTCATGTGGGGTCCCTTGCTTTTGTGATGAGGCACGATAAAGTTTCTGCTCAGTGCTGAACTTTATGCTGATGCCAGTGCCCACAGAGTGAGACCAAGGGGGCACGTCTGCCCAGAGCCCTCTTTTTTTTTTTTTTGGCCCATACCTGGGTAATTGCCTTGGACTTTGCTACCCAG
Seq C2 exon
GCAGTTCCCGAGTTACGTTCTGTTGCATCTGGGAACCGAGGAGAGCCCAGTGAAGGCTGCCGTGACAATGAAGAGTAAAAGGATCTCAGTGTAGGCACAGGAAGAGGCCTAGGGCAAGGTAAGGACCATCAATGCTTTTGGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204:ENSRNOT00000030517:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]