MmuINT1022994 @ mm10
Intron Retention
Gene
ENSMUSG00000051730 | Mettl5
Description
methyltransferase like 5 [Source:MGI Symbol;Acc:MGI:1922672]
Coordinates
chr2:69871198-69871781:-
Coord C1 exon
chr2:69871732-69871781
Coord A exon
chr2:69871317-69871731
Coord C2 exon
chr2:69871198-69871316
Length
415 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
AATTTTTTCCTTTTATACAGGTG
3' ss Score
9.75
Exon sequences
Seq C1 exon
AGCTTCGATATGATCTACCAGCATTATACAACTTTCATAAAAAGAAATCT
Seq A exon
GTAAGTTTTCCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTCTTACCAAGGTAAATGGGTAAATATAAAGTCAGCCTGAGAGATTAGACAAATTAGCTGTGGGAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAAACGTTTTAAGAGAAATAAAAAGAAGAAAGAACTATTGGCTATTTTTATACAGTATATATTTTACAAGTCTGTACTAATACATTCTCATATTACAAAGGCAATTAAGAGGAAGAATCTTCCTTCTCATATTTTAATCATCCAAACACAAACAGAACTATACATTTTAAAAAACTTTCATTTGGATAACAACAAAAAGAAGACAAGTAAAACAAAAATTTTTTCCTTTTATACAG
Seq C2 exon
GTGGACATCGAAGTGGACCTAATTCGCTTTTCTTTTTAAAAGCTTCTGAAGACAAAAAGCAGCTTAAAATCTAACTAAGGAATAAAAACACTGCTTACTAAATAAACTACTTGTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051730:ENSMUST00000060447:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types