RnoINT0091796 @ rn6
Intron Retention
Gene
ENSRNOG00000008469 | Mettl5
Description
methyltransferase like 5 [Source:RGD Symbol;Acc:1566062]
Coordinates
chr3:56101580-56102339:-
Coord C1 exon
chr3:56102290-56102339
Coord A exon
chr3:56101818-56102289
Coord C2 exon
chr3:56101580-56101817
Length
472 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AAACTTTTCCTTTTATACAGGTG
3' ss Score
9.03
Exon sequences
Seq C1 exon
AGCTTCGATATGACCTACCAGCATTATACAACTTTCATAAAAAGAAATCA
Seq A exon
GTAAGTTCTCCAATTGTGGCCTATGTATATTCACTATTCAAAAGTTTTGCAATGGTCATTTCCTCTTACCAAGAAAGATGGGTAAAAAGAAAGCCAGCCCGAGGGGGGGAGGGGGGAGGGGGGAGGGAGAGAGAGAGAGATCGAGAGATGGAGATCGAGAGGCAAGTTAACTGTGGGAAGGGCTTGTATCATAGTAGTCAATATTCTAGTTGAAGTTCTTTGTGAAAAGTTCTAAGAGAAACAAAAGGAAAGAAAAACAAAAGGAAGAAAGAACTATTGGCTATTTTTATACAGTATATATTTTACAAGTCTGTACTAATACATTCTCATATTACAAAGGCAATTAAGAGGAAGAATCTTCCTTTTCATATTTTAATCATCCAAACACAAACAGAACTATACATTTTAAAAAACTTTCATTTGGATAACAACAAAAAGACAAGTAAAACAAAAAACTTTTCCTTTTATACAG
Seq C2 exon
GTGGACATTGAAGTGGACCTAATTCGCTTTTCTTTTTAAAAGCTTCTGAAGACAAAAAGCAGCTTAAAACCTAACTAAGGAATAAAAACACTGCTTACTAAATAAACTACTTGTCTCTAGCACCATTCTCTCTTTTCTTATGCTTTGATGCGGGTTCTTCTCTGTCTCTTCCGTCTCTTCCTCTTTTCACTGGTCCTATTACAACAAAGAATTTTGTTAAATTCAGTGTAAGCACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008469:ENSRNOT00000011303:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCGATATGACCTACCAGCA
R:
ATTCTTTGTTGTAATAGGACCAGTGA
Band lengths:
262-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]