MmuINT1023501 @ mm10
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83784277-83789042:+
Coord C1 exon
chr17:83784277-83784335
Coord A exon
chr17:83784336-83788920
Coord C2 exon
chr17:83788921-83789042
Length
4585 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TTACATTTCATTGAAAGCAGCAA
3' ss Score
0.6
Exon sequences
Seq C1 exon
AAGCGCCTAAAGGCCGCAGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCGACTTA
Seq A exon
GTAAGTAATCGAGTCCTTTGAGACATTGTCCTGCTCTTAACCCTGCCCTTCCAAGCACGCCATTTGTTCGCTGTGACAAACCTGAATAGTTTTGTGTGTCTTTCTTACCTGTTTTTCCTCCTCGAAGCTCAGAACTTGTTTTCTGTTGTCCTACGCAACAACTTTGGGAAGGAGTGGGTGACCTGCACAAGGGCTGGAGGCTCAAGCGCAGCTTGTTTTTGTATGAAGCTACAGGGCAAGTGTCAGATGTCCCTGTGAGAGAGAGAGTAACCGTGTTACTAAAAGCAGCTGTTTGACACAGCTAGGACTTAGTGAGAATTCTGCAGGGCAGGAGGAGCGTCCTTGGGTAGTGTGCCTCGTTACTGTGAGGTGTGTTGTTTGCATGATTTGCTGAGGGGTTTACGTTGTTTTCTTGGACCACACTTCGTGAGGAGATGGTCAATAGGTTCTGGTTGTTTCCTGCATCTAGCATCCTATCACATCTTTTGGGTTTTCAGGTCATGGTCGTATAAAAGTGAGTGTCAGTTTTCTTTTCACTCCATCTGTGTTAAGGGCATCACACTCGTCCATCGTTGATGTCTTAGGTTTGGTTACTCAAATCTACGACAACTTTCTCTTTGCCACTTCAAGATTTTTCAAATTCTTTGAGCTAAAACCAGCAATTCTGTGTAGATGTTTCTGTGCTGGGTCTGGGTATATTGCATAGTACATGTTCGTACACGCAGGAGGCTTCGCGGACATTTACCTCAGGGCATAACTGATGTACTTGTCATGGTTCTTGTTGTTTTGTTGTTGTGTGTGTGTGTGGGGGGGTGTTTTGTTTTGCTTTCTATTTTTTTATTATTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTAGAACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGGACTGCCTGCCTCTGCCTCCCGAGTGCTTTAGATTAAAGGCGTGCGCCACCACACCTGGCTTTCTTTTACTTTTTGAAAGCTGTAATTTACACATCCCATAATTATTCTATTTCTTCTGCAGTGTTGTTTTGATATCCTTTAAAATTATGTATTTACTTTACAAATTCAAAATATGTTGTTCCACAAGAAAAACCCTGGTTGTGACTCAAGTCTGAGCTTCTCAGGGCAAACAGCCTTGCCCCTGTCCCACAGTGCCCCACAGTGCTGACACCTCAGAGCGAACACGCGGCACCTGTGGGGACTCAGTGACCCAATGACTGATTTTATTCAATGTACCCTGGCTTTGGTGTCTTTATCTGAGCCAGGGATCCACACAGTAGTCTGGATAAAAATCTCAATTGTCAACTGTTTCTGAAAATAACTTTCCCTGGAGCACAGTCTTGCGTATTAGTTATAGATTGTCCAAGCCACCTGCAATAATGTCACAAGCACACAATTTAGTTGTTGTGACTGTGTTACCCACAAACTTAAACTTCTTTACTACTGAGCCATTTATAAGAAAAGTTTCCTACATCTAGATTTAAATGATCCTTGGAGAACAATTTCTAATCATACTCATAAAAAATATGCCTCGTTTGCATTGTTTAAAAATAAGCTGAGTAACAGAGTTGTATGTAAATCTGGTTCCTCCCCAATGAATTTCCCAGTTAACTGGGAAATAGAATGTTGTTATTTCAATAGATCATGAAAGCTCTTTTTCTGTCCTGTTTTGAACCTGGCAGCCTCCTACAGTCAAAACCTTGTGTTTAGTTCCGAGGGCAGGTTAAGAAGATCAGCTGCCCTCCAGAGGCATGTGGTACAGACCTTGCGCAGACCTTGCCTGCTAAGAACAGTGACCAAGAAGATAGCGTTGGGGGAGGAGCTGTAAATATTTTGTTATGCCCCCCCCCCAAAAAGAGTCTTTGAGGAAGTAAGTGTGAGTGCACATGGCTGCAGGCAGTTGCACTGAACAGCGAGTGGTGTCCTGAGCTGGGACAGGACCGAACACAATAGAGGAGCCTGGAGAAAAATGGTGTGCCTGGTGTGAAGAGAGTAGTCAGCCAGCCCCAGGGGCAGGGCAGTGCAGTATGGGTACCCATGATTTGAAGAATGGACAAATTTGAAAGAGGAGTCATGGTCTTGAAGATGACAGGTTTCATTTGGATCCAGGGAGCAGCAGGGCATATATGGGGAGACTGGCTATGGGTGCTCAGGAGGAGAGATGGCACCAGCTTGACCTAGGAAGAGCTTTGGAAGCGGTGCTGTTTGGGAGGTGACTGACCTCGGCTTGTCAAGGTTAGGTCCACAGTTAGGTGACTGTTCCTGCGAGTCACCAAGCTCAGAGAAGGTGGCGCAATATTAGGTGAGGCCACTGCGAGTTTGTTCCATCATAAAAGGAGTAAGGAATGTAAGTGCAGCATACACTGAACACACTGACCAGTACACAAAGCCACTGCATTGTGGGCACCAAGAAATGTTTATGAAAATATTCCGTGAAACTGTCCTTCCTCTAAAACACCCTCCCACGGTCTCTCACAACCTGGAACATTTTATACCTGTCATTATCCTCCCTGGACCTGCCTCAAGTTACTATTTACACATAATAATCAGAGTTGTGAACGGTTGTGAGCCACTGTGTGGGTGCTGGGAATCAAACCCAGGTCGTCTGCAAGAACAGCAAGTGCGCTTAACCACTGGGCCGTCTCTCCAGCCCAGCACTGGCCCTTCTTAGACTCAAATCTTTAGTCCTGCATTTAAATGCCAAGTTTCCACATTTCTGGGAAACGTTTCACTAGATTTAAGTGAGTAGGGGCATTGTTTGAGCCAGTCCATGGCAGAGTCCTTTTCAACTGGAAATGTTAACACCTCTTTGGGAACTTGAGTTTCTCTGAACTACTTCCTTTCTTTTCTTTTTTGAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTGCTCGCTCGCTCTCTCTCTCTCTCTCTCGCTCTCTCTCACTCTCTCCATAACCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGTCCTTGAACTCACAGCGATGCCACTGCCACTGTCTGGAGGCTGTGATTAAAGGCTTACAGTGCCAGCCCCGCTTCTCTTCTTTTTGTTCCAAAAATACTAAACAAACAACAAAACCTGTTTCGTTTGTTTGTTTGTTTGTTTGTTTGTGAATGTGTGTGTCCTGAGCTGGGGAGAGGGGTCTCACAGTGTAACAGAGATGAAAGGTTCACTAGCAGGAAGCTCTTCTGGGGCAGATCTTTGTTTCCTATGTAGTGAGTCTGTATTTCTGAATGGTGTGCACTGTGCATGCAGCTGTAGGCACAGCTCTAAGCAGGGGTTAGCCTACTGTCAGCTCTGTTTACATAGTAAGTGCCCTGACATGTGCAGCCTATGTGTTTAAAGAGTTAGAGCTGTGCTGGCCAGTCTGCATTCAGTTTTACCAGCGTCTCTGATGCGTTTGTACTTAGCCTCCTGACCTATGTCTTTTTTTCTCCTAAAAGTGTTTTCTTTTTTTTTTTCAAAGATTTATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGACATACCAGCAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCCGAAGAGCAGTCAGTGTTCTTACCCGCTGAGCCATCTTGCCAGCCCCTGAAAGTGTTTTCTTAAAACAGAAGAGGGAAAAACAAATCTAAAACATGAACTCAAAAGCTTTCTCATCCAATTGCTAATCTGCCTCAGAAAACATAATGTGAATTTTTATCTCGAGCTTGGGACAGGTGCTCCTTGGCTGTGTGTGGCGGGTGGCCCTGCAAAGCTAGCCTCACCCCCTCGGGAGCACTGTAGCGGCCACAGCGTCATCCCAAGCAGGAGAGGAGCCAGGGCTCTTCCAGCCCCACAGCACTGCCCTTACCTTAACACCCAATCAAAGGCTGTCTTTGTCAGGAAAATGTCTGATGAAGATAAAGCCCAGGGGCTTCTGTCTTTCAAAAGTACAGCGAGCTGTGGAGAATTGGCACCGGTATGGTGTCCACAGGAGCCATGCCTTCGCCGCAGAGTGCCTGAGACAGGACTCTGGCTGTTTTATAGCTCTGTTTTGCAAAATGAGTGCCTTGGTTTTATTTTGTTTCTTTTTTCTTATCATTGCACCAAATATACCCTCTTATGTAAGTTCCTGGAATCATGTGTGCCAATGTATTTCGTTTTGTTTTGTTTTTTTTTTTCTTTTTCTTTTGGTTGTTGTTTGGTGTATGTGTTTGCGGTTGTTGTTATTTTTTTTTTTAGGTTAGTGTACAAAGTCCTGGGTCCATCCCAGCATCCTTGTTCGCACCTCCCACCATACTTCCTTTTCATTGTCTCCCTTCACTGCCTCCCATACTTGGGTGCATCTTCACACCCTGCTTTTCCCAGTCTCTGTCTTCCTCACTAAATGGATTAAGTATCTGTTCGTATTTCAGGGAAGGGAAATTAGTAAGGAGGTGCCTGCTTTTGACCTTGTCCTACAAATTGTTTTTATCATCTCACTTTACATTTCATTGAAAGCAG
Seq C2 exon
CAAACCAAATCCCAACCAAATCTCCAGCAGCAACGGCAAGGCTGGCACTGTGAATGGAGCTGTGGGGACCCAGTTTCAGCCCCAGAGCGCCCTCCTAGGGCGAGCCTGCGAGAGCTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817:ENSMUST00000067826:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.972 A=NA C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types