GgaINT0081596 @ galGal4
Intron Retention
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23360027-23362233:+
Coord C1 exon
chr3:23360027-23360085
Coord A exon
chr3:23360086-23362108
Coord C2 exon
chr3:23362109-23362233
Length
2023 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
CTGACTTTTTTTTTTTAAAGTAA
3' ss Score
6.16
Exon sequences
Seq C1 exon
AAACGTCTGAAAGCAGCTGAAGCAGAAAGTAAATTGAAACAAGTATACATCCCCACCTA
Seq A exon
GTGAGTATAACAATAAACTTCTTTTTTAATAACTTATAGGTGAAACTGTAATGTATATCAATGCATGTGATATTCCCTTCATCTGTGTCCTAATACTTTTATCATTTATATACAAACAGTATATGCACATGCAGAAGTATAATCAGAAAATGCTATAAATTCTTTGTCCTTATTTCAACCCATTGGCTTTGACCACTAAACTTGCTCTTCTGGAAAGTTGAGAACTTCTGCAAAAGTTGATAAAGTGCTACATGAACTGCTCACATGCTAGAATGGTCTTGTCATTTAAAAGCAGTTTTTCTGGATTAGTTGCTTCAGAATCTCTGTAGCTCTACATTTAATATTTGTGTAATTCAGAATTTCAAAATAGCGGCTGTTTTTAATGTAGTTACATAAAATCATATACTCCCTTTGGTTACAGTTTTATCTTCTTGATATCATCTGTTCTTGAGTTAGAGACAAGATGTTCTGGCTATAAATTAAAGGTAGCACACAGCCCAAAATCTTTTGCCTTTGATCAGTTCTTATTAATGAATTCTGTTTTCCTCTGAGAGATTTATATTTTAGTTCTTTAGATTTAAACTTGATTCTAGATTTGCTTTTGTTAATGTGTGGCTTATAGAACCAAGATATAATCTCTATTTCATATTTATAATTTCCTTAAGATTACGATAAGAGAGGGGATTACAGATGACATTCTTTAAAGGTTTTTGTGGATAATATTGAGTTTGTGTGTGAATTTACCCATTAATACCAGTGTTTATATAACAGAAGACTAGAATACCAGATGAAATACTTTGAAAATTCATTGTTGCCTTTCTTATTACATATATAAATTGGATACAATAGGTCTTAATTTGCATATTTCATACGGACTTTTTCTCTTAAATGGATTTAATACAAACAGCAGACTGTTAAATTCAGTCTTTTAATTTCATCTGTGAAAAGGCACTGTGAGTTTTACAGCTCAAGTCTCTAATAAATGACATCTTTGGAAAAAAATTAACATACATTAATTTTGCAGTATGGATATTTCTTGACATCATAGGCTAGAGGATTATGCTGAAAAGTCTTGTATGAGTGTTCCCTAACTCTCTCAGGGAAGTAGCTGATTTAGGAAAATTGTTAGGGACTAGCTGTATTGGTTGACATAAGCTGTTGTTGAAAAGTAGCTACTTGCCTCCATTTTGTTTTACTACCATCTTTCACCTCTATGTCAAGACAGAATCCATGGTCAGTTGTTAGAACAAGAATTCTTGAGACTTTGATAACTGCATTCTGAGGCACATGTAAGCAAACATAGTTCTAACGCTCTATTTCAAGACAAATTTATTGTATTTGAAATCTGAGTGGCATTGGTTCTTACAGCTGAATACCTGTTTGAGTAGGAAGTACAATCATCATCATCATAAAATATCTCACACACAATCACACACACACACACACACACACACACAAAAATTAAAAAAAAAAAGTCAAAGAGTGGTTCTTCCACCCTCTTAGAATGGGAATGGTTTAGGACACAACCCAGGCAGAACAGCCTGATACATGGATGATCTTTGCCAGGGTTATAGGACTGCAGCATATTGCAGTTAGTAGGAACTTTCATGCTTCTAGTTTAGATACACAGCATCCTCTGCTCTGGACAGCCTTGTCGTATTACAGGCAGTGTTACTACTTTCATGTGTTATGTATTTCACAGAAAAACCAACCTCATCCTGTAAAGCGTTGCAATCGGGGACTGTGGTGTGTCAGACTTCTTTCAGTGCTTGACATTAAGGCTTGCTTTGTCTTTAGTAGCTTGCTAAGCAGGTTTGACCATTTTACAAAGGTCTGTAAATTTGAGTTCTGAAGCTGCTCTTTACATAACAACTCTGTGTTGTAAATACTGGGGAAAGATTAAAAAAAAATTAGTCTTCTATTAATTTTTACAAATGTCATCACCAAGCAGAATTCCAGAATTAAATTGTATTCATTTTTATTAGCAGATTAGAAAATAATTTCTGACTTTTTTTTTTTAAAG
Seq C2 exon
TAATAAACCAAATCCCAATCAAATATCCAGCAACAATGGGAAACCTGCTACAGTCAATGGAGCCATGGGAGCCTCTTACCAGGCACAAGCCTCACTAATAGGGAGGGCTTGTGAAAGCTGCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925:ENSGALT00000016137:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]