MmuINT0101450 @ mm9
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:84183617-84188382:+
Coord C1 exon
chr17:84183617-84183675
Coord A exon
chr17:84183676-84188257
Coord C2 exon
chr17:84188258-84188382
Length
4582 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
ACTTTACATTTCATTGAAAGCAG
3' ss Score
2.01
Exon sequences
Seq C1 exon
AAGCGCCTAAAGGCCGCAGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCGACTTA
Seq A exon
GTAAGTAATCGAGTCCTTTGAGACATTGTCCTGCTCTTAACCCTGCCCTTCCAAGCACGCCATTTGTTCGCTGTGACAAACCTGAATAGTTTTGTGTGTCTTTCTTACCTGTTTTTCCTCCTCGAAGCTCAGAACTTGTTTTCTGTTGTCCTACGCAACAACTTTGGGAAGGAGTGGGTGACCTGCACAAGGGCTGGAGGCTCAAGCGCAGCTTGTTTTTGTATGAAGCTACAGGGCAAGTGTCAGATGTCCCTGTGAGAGAGAGAGTAACCGTGTTACTAAAAGCAGCTGTTTGACACAGCTAGGACTTAGTGAGAATTCTGCAGGGCAGGAGGAGCGTCCTTGGGTAGTGTGCCTCGTTACTGTGAGGTGTGTTGTTTGCATGATTTGCTGAGGGGTTTACGTTGTTTTCTTGGACCACACTTCGTGAGGAGATGGTCAATAGGTTCTGGTTGTTTCCTGCATCTAGCATCCTATCACATCTTTTGGGTTTTCAGGTCATGGTCGTATAAAAGTGAGTGTCAGTTTTCTTTTCACTCCATCTGTGTTAAGGGCATCACACTCGTCCATCGTTGATGTCTTAGGTTTGGTTACTCAAATCTACGACAACTTTCTCTTTGCCACTTCAAGATTTTTCAAATTCTTTGAGCTAAAACCAGCAATTCTGTGTAGATGTTTCTGTGCTGGGTCTGGGTATATTGCATAGTACATGTTCGTACACGCAGGAGGCTTCGCGGACATTTACCTCAGGGCATAACTGATGTACTTGTCATGGTTCTTGTTGTTTTGTTGTTGTGTGTGTGTGTGGGGGGGTGTTTTGTTTTGCTTTCTATTTTTTTATTATTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTAGAACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGGACTGCCTGCCTCTGCCTCCCGAGTGCTTTAGATTAAAGGCGTGCGCCACCACACCTGGCTTTCTTTTACTTTTTGAAAGCTGTAATTTACACATCCCATAATTATTCTATTTCTTCTGCAGTGTTGTTTTGATATCCTTTAAAATTATGTATTTACTTTACAAATTCAAAATATGTTGTTCCACAAGAAAAACCCTGGTTGTGACTCAAGTCTGAGCTTCTCAGGGCAAACAGCCTTGCCCCTGTCCCACAGTGCCCCACAGTGCTGACACCTCAGAGCGAACACGCGGCACCTGTGGGGACTCAGTGACCCAATGACTGATTTTATTCAATGTACCCTGGCTTTGGTGTCTTTATCTGAGCCAGGGATCCACACAGTAGTCTGGATAAAAATCTCAATTGTCAACTGTTTCTGAAAATAACTTTCCCTGGAGCACAGTCTTGCGTATTAGTTATAGATTGTCCAAGCCACCTGCAATAATGTCACAAGCACACAATTTAGTTGTTGTGACTGTGTTACCCACAAACTTAAACTTCTTTACTACTGAGCCATTTATAAGAAAAGTTTCCTACATCTAGATTTAAATGATCCTTGGAGAACAATTTCTAATCATACTCATAAAAAATATGCCTCGTTTGCATTGTTTAAAAATAAGCTGAGTAACAGAGTTGTATGTAAATCTGGTTCCTCCCCAATGAATTTCCCAGTTAACTGGGAAATAGAATGTTGTTATTTCAATAGATCATGAAAGCTCTTTTTCTGTCCTGTTTTGAACCTGGCAGCCTCCTACAGTCAAAACCTTGTGTTTAGTTCCGAGGGCAGGTTAAGAAGATCAGCTGCCCTCCAGAGGCATGTGGTACAGACCTTGCGCAGACCTTGCCTGCTAAGAACAGTGACCAAGAAGATAGCGTTGGGGGAGGAGCTGTAAATATTTTGTTATGCCCCCCCCCCAAAAAGAGTCTTTGAGGAAGTAAGTGTGAGTGCACATGGCTGCAGGCAGTTGCACTGAACAGCGAGTGGTGTCCTGAGCTGGGACAGGACCGAACACAATAGAGGAGCCTGGAGAAAAATGGTGTGCCTGGTGTGAAGAGAGTAGTCAGCCAGCCCCAGGGGCAGGGCAGTGCAGTATGGGTACCCATGATTTGAAGAATGGACAAATTTGAAAGAGGAGTCATGGTCTTGAAGATGACAGGTTTCATTTGGATCCAGGGAGCAGCAGGGCATATATGGGGAGACTGGCTATGGGTGCTCAGGAGGAGAGATGGCACCAGCTTGACCTAGGAAGAGCTTTGGAAGCGGTGCTGTTTGGGAGGTGACTGACCTCGGCTTGTCAAGGTTAGGTCCACAGTTAGGTGACTGTTCCTGCGAGTCACCAAGCTCAGAGAAGGTGGCGCAATATTAGGTGAGGCCACTGCGAGTTTGTTCCATCATAAAAGGAGTAAGGAATGTAAGTGCAGCATACACTGAACACACTGACCAGTACACAAAGCCACTGCATTGTGGGCACCAAGAAATGTTTATGAAAATATTCCGTGAAACTGTCCTTCCTCTAAAACACCCTCCCACGGTCTCTCACAACCTGGAACATTTTATACCTGTCATTATCCTCCCTGGACCTGCCTCAAGTTACTATTTACACATAATAATCAGAGTTGTGAACGGTTGTGAGCCACTGTGTGGGTGCTGGGAATCAAACCCAGGTCGTCTGCAAGAACAGCAAGTGCGCTTAACCACTGGGCCGTCTCTCCAGCCCAGCACTGGCCCTTCTTAGACTCAAATCTTTAGTCCTGCATTTAAATGCCAAGTTTCCACATTTCTGGGAAACGTTTCACTAGATTTAAGTGAGTAGGGGCATTGTTTGAGCCAGTCCATGGCAGAGTCCTTTTCAACTGGAAATGTTAACACCTCTTTGGGAACTTGAGTTTCTCTGAACTACTTCCTTTCTTTTCTTTTTTGAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTGCTCGCTCGCTCTCTCTCTCTCTCTCTCGCTCTCTCTCACTCTCTCCATAACCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGTCCTTGAACTCACAGCGATGCCACTGCCACTGTCTGGAGGCTGTGATTAAAGGCTTACAGTGCCAGCCCCGCTTCTCTTCTTTTTGTTCCAAAAATACTAAACAAACAACAAAACCTGTTTCGTTTGTTTGTTTGTTTGTTTGTTTGTGAATGTGTGTGTCCTGAGCTGGGGAGAGGGGTCTCACAGTGTAACAGAGATGAAAGGTTCACTAGCAGGAAGCTCTTCTGGGGCAGATCTTTGTTTCCTATGTAGTGAGTCTGTATTTCTGAATGGTGTGCACTGTGCATGCAGCTGTAGGCACAGCTCTAAGCAGGGGTTAGCCTACTGTCAGCTCTGTTTACATAGTAAGTGCCCTGACATGTGCAGCCTATGTGTTTAAAGAGTTAGAGCTGTGCTGGCCAGTCTGCATTCAGTTTTACCAGCGTCTCTGATGCGTTTGTACTTAGCCTCCTGACCTATGTCTTTTTTTCTCCTAAAAGTGTTTTCTTTTTTTTTTTCAAAGATTTATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGACATACCAGCAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCCGAAGAGCAGTCAGTGTTCTTACCCGCTGAGCCATCTTGCCAGCCCCTGAAAGTGTTTTCTTAAAACAGAAGAGGGAAAAACAAATCTAAAACATGAACTCAAAAGCTTTCTCATCCAATTGCTAATCTGCCTCAGAAAACATAATGTGAATTTTTATCTCGAGCTTGGGACAGGTGCTCCTTGGCTGTGTGTGGCGGGTGGCCCTGCAAAGCTAGCCTCACCCCCTCGGGAGCACTGTAGCGGCCACAGCGTCATCCCAAGCAGGAGAGGAGCCAGGGCTCTTCCAGCCCCACAGCACTGCCCTTACCTTAACACCCAATCAAAGGCTGTCTTTGTCAGGAAAATGTCTGATGAAGATAAAGCCCAGGGGCTTCTGTCTTTCAAAAGTACAGCGAGCTGTGGAGAATTGGCACCGGTATGGTGTCCACAGGAGCCATGCCTTCGCCGCAGAGTGCCTGAGACAGGACTCTGGCTGTTTTATAGCTCTGTTTTGCAAAATGAGTGCCTTGGTTTTATTTTGTTTCTTTTTTCTTATCATTGCACCAAATATACCCTCTTATGTAAGTTCCTGGAATCATGTGTGCCAATGTATTTCGTTTTGTTTTGTTTTTTTTTTTCTTTTTCTTTTGGTTGTTGTTTGGTGTATGTGTTTGCGGTTGTTGTTATTTTTTTTTTTAGGTTAGTGTACAAAGTCCTGGGTCCATCCCAGCATCCTTGTTCGCACCTCCCACCATACTTCCTTTTCATTGTCTCCCTTCACTGCCTCCCATACTTGGGTGCATCTTCACACCCTGCTTTTCCCAGTCTCTGTCTTCCTCACTAAATGGATTAAGTATCTGTTCGTATTTCAGGGAAGGGAAATTAGTAAGGAGGTGCCTGCTTTTGACCTTGTCCTACAAATTGTTTTTATCATCTCACTTTACATTTCATTGAAAG
Seq C2 exon
CAGCAAACCAAATCCCAACCAAATCTCCAGCAGCAACGGCAAGGCTGGCACTGTGAATGGAGCTGTGGGGACCCAGTTTCAGCCCCAGAGCGCCCTCCTAGGGCGAGCCTGCGAGAGCTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-Mta3:NM_001171053:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=0.997 A=NA C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: