DreINT0098372 @ danRer10
Intron Retention
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25168094-25170976:+
Coord C1 exon
chr12:25168094-25168152
Coord A exon
chr12:25168153-25170851
Coord C2 exon
chr12:25170852-25170976
Length
2699 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
ATTTGCTTTTTGCCTCACAGCAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
AAACGACTGAAGGCAGCTGAAGCAGAGAGCAAACTGAAGCAAGTCTACATCCCTACATA
Seq A exon
GTGAGTATGGACAAAAAACATCTTCACATGAAAATTAGTTTCGACTTCCCGCCCAACGTAACAAGGGGGCGGAGCCAAGAGCTCCCCCGCTCTGTGTTTGGCAACAGACAGGCAGACAGAGAGAACCAACATGAGTGAGAGGACAAGCATTCAGCTATACATGTACGACTCGGACACAGATCAAGCAGAGAGTACAAAATCATTTGTGTCTTTGTATAGTTTTAAAGCCAACTGTGTGCTAGTTTAAAGTTCTGAGCTTGTACACCAAAACTAATAACCACGCACAATGAATTAACTTTGACTGAGGCACCAGATGCGCTGCTCAGAGCCACGACACAGCACACCAGACACGCACATTCACATGTTATTAAAATGAAACATGTTCAGATGATGCTCTGTGGCGCGGCAGAAATATGAAGTGTCCCGAATTGTGGCTCGCTGCCGCCAACAGCCGTTGACTTAAAGCGCTGTTGTGTGTGTCCTGATAGAAACCTGTGTTTAGGATTCTAAAATGCATGGCGCTGCGTGGCACTTGTAGTGTGCGATCTGCAGGCAAGTTCGTTGTTTTATTTCCAATGGATGGACACGCACATGAGGCAACCTGCTCGCACTTTCCAGCTGCACCTAGTTAAGATCACAGGGAGCTTCTGTGACTGCGAGAAATGCAAACAGCTGAAGTGTAAGCTAGACGTAATGAAAGTACACGTTTGCAAACGTACCTACAAACAAAATAACTTGCAAACAATAATTCCGATAACAGTGATCATGTGGTGAATGCTGATCTTGTGTTGAGCCTTACATCTGAAAAAAAGAGCAAGGGTGTTCCTTTAGTGACATCGCTATGACTCAGGCTGAAAATGGCGGACGTGAAACAACAAACTGAGGATATGGTGATGCGCGCCTGTTAATCAATATTGGTGGGCGAGGGGACTGCACTCCTACGTCAAGTTGCGGTCGATTTGAAAACCGCTCCAATTGGTCCACCGTTTTTATGTTGTTAAATTGGGGGGTGGGGAAAGGACTGGGTGTGTTTAAATCACCTCAATATGACGATCTGTACACTATACTTACACACGCCTGTCCAAACAGCTTGAAAAGTAGATTTTTCACCATAGGTGCCCTTTAAGGCTAAAAGTAGCTTCTAACTTGCAAATTTCAGAGAACATTGTTAAAATAATGGATGTGTCAGTCCTAGTTTAATGACTCTGTTAATCTAAGAGTGTTTCATAAGTGTTGTAGCACTAAAATAGCTCCTCAATCAGTGAAACATTAGGAACAATGAAGAGGACTCTTTAATCACCAACTGTCATAAAATGGTTGTTGCCTGCAATCTGCATAGAACAGAACACATTTGATCACAATGGGCTTGTAAGAAGTTCTCACCTTAATCATAGAGCGATTCTTATATGGTAAGAAATGGGTTTTCTAAATTGTTTTACATTTCAAATTGCACAAAAAGGACCAAAGCATTCAAGCAAATTTATGTTCTGTTAATGTAACTTTTTAGCAAACCTCCTAATTCCTGCAGCACAATTGCTTTAAGTGTCTAAAGTGGTGGATCTGTTCGGCGAAATATTTGACTGTGTGTCACTGCATCTTAATTGACTAAAACTATATAACTACAGAAATCTCCACTGTGCTGAGCGAGAGCGCTTCTCTACTGAACAGTGCATCATCAATGACGTAAGTGTGCCCAGGCCCGAATGTAATGTGAGTGTGGGCCACCGGAGGAGACGGGAGGGGGAACAAGCGTGCTTTGGCCCGGTTCAAGGCAACTGTACATAGTATGAGTACGCCCTTATAAGCATCAAAAGTTGTGGATCTGTTTGGCAAAATATTAGACTGCATGTTACTGCATCTCAATTGACTACAACAACATAACTGAAGCAATCTCTACTGTGCTGAGCGAGAGCACTTCTCTTCCTGTTAAACTGAAGAGTCACATCATCAATGAAGTACGCGTGCTCAGGATCGAAAGGCAAAATGCAGTGTGAGTGCAGGCCATCTAGGGTAGGGGTGCAATCGCTCTTTGGCATGGTTTAAGGCAACTGTAACGAGTGTAAGTACAACCTTAGTCTGTATTTTAAAATCTTTGTTTGAATATGGCAACATAATATTGCACCCTACGAAGTTTCCATGAATAAATCTCTGACTGAAACTCCTCCCCTCCTCTATCAGCCAGTCACTGTGTGCACAGTTAGTAATTATGCTAACATTATCAATCATAGCAACAAGGTCAACCGGGCCCTTACTTTTAGCTTAAAGCTTCAATTTAATCCTTAGTAAACATTTGTGGAAAAAAAATTGACAACAGGTTTTAAGAGAAACTCATTTCCCAGTTTTTACTGCTGTTCAGAACCCAAAAAAAGTGAATTTTTTTTTTTTTTTAGCTTGTCAATGAGCATAAGGCCAATCTTACACTGCAATAGTGGCACAAAAGTCAGAGGAGCCATTACTGTTTATTGTATCCCGGAGGTGGCATGAGTGCATTTACACAGCAATTACAACTAAAATCTTCAAGATGTTTGCTAATATTTTTTTTATTTAGAAGTAAAGGAAATTATGGGAAATGTTACGTTTAATTGATACATAAAACAAATGAAAATGTGGTGATATTTATTTTTTTCCATGGTTGGAAAAGAGTGTGTTATTTGTTTTTTTATAGTGTACGTAAATGTAATTTGCTTTTTGCCTCACAG
Seq C2 exon
CAATAAACCCAACCCAAACCAGATCTCTGTCAGCAATGGCAAGATGGCAACAGTGAACGGTGCAGCAGCAGGCACAGGCAGTTTCCACACAGCTGGAGGGGGCCGCGCATGCGAGAGCTGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903:ENSDART00000127454:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]