MmuINT1023739 @ mm10
Intron Retention
Gene
ENSMUSG00000030131 | Mug2
Description
murinoglobulin 2 [Source:MGI Symbol;Acc:MGI:99836]
Coordinates
chr6:122006761-122008489:+
Coord C1 exon
chr6:122006761-122006944
Coord A exon
chr6:122006945-122008305
Coord C2 exon
chr6:122008306-122008489
Length
1361 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGGATCTCCTTCCTTTCCAGGAA
3' ss Score
11.11
Exon sequences
Seq C1 exon
GAGAGGACTCATAAATAAGCCGGCTGTAGAGGACTCTGGAGACAGTGTTAAGGAGGAGACACCATAAGCCCTGTCCTCCTGTCCTTTCTTACCACACCATGTGGAAGAGCAGACGGGCTCAGCTGTGTCTTTTTTCAGTTCTTCTTGCCTTCCTGCCTTCTGCTTCTTCACTCAATGGAGACTC
Seq A exon
GTGAGTACCTCCAAAGCCATCTTCGTATATTCTCTCCTCAAATCAAAAAACAATCCATTTCCCTTTACAGTCCCTTCCCCTAAAAACCTCCTTAAATTCTTTTTGCTTTATAACTAACAAATAATTGTTTATGTGTGCTTCAACTTTAGTATTGTATGATTCTGGATAATCATTTTTCCTACTCTAAAGCAATCATTGTTAGTAAACTGAGGTGTGGTGTGATTTAGAATAACTTTCCCCTTATTACTGAACAAGTAGTATCTCAAATCCCAATGGTCAGAGACATTCTCTGGTGTTGAAACTATGTAATAACTTTGAAAAGTAAGCATTTAGATTGTTAACATTCTTGATTGGAAATGTGTAGCCAGTGGTGTAACCTTGAGACAGATAAGACTTCAGGCACATCAGAAATCTGTGGATGTTTGTGTCCTAAAATAATACATTTGTTAACATCAAAGACCTTGGATTAAACTACCAGGAGAATTTATTTTAATGTCAAAAATAACCATAAAATAGGATTATATTGTTGAGTAACTTTTTTTTGTATCTGTGATCAGAAAAATATATTCAAGGTGTTAAAAATAAAAAGCAAGCTAATAATATTTTGCATACAGTGATATAGCAGTGACAGGCTAGATTTTTGGGGGACAAAAATCTCTAATTCTAGGAAAAAGAAGAGAATGATTCCTACAGAGAGCCTTCGACATTTGCAAAAGTACAGCATAGGTGAATTATGCAAGTTGGAATTTTACTGTCACATTATAAATCTTAGGTTGAAGAGTACCCAAAAGTAAAAACAGGGTAATGAGTTATATTTTAAGAATTAAAAATGGGTTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTCCAGAGGTCCTCAGTTCAATTCCCAGGAACCACATGGTGGCTCAAAAACATCTGTAATGGGGCGATGTCCTCTTCTGGCATGTCTGAAGACAGTTACAGCGTCCTCATATACATAAAATAAATAAATAATTTTAAAGGAATTGTAAATTCTAATGAAAAGCACTCATGATAATTTCTTATGAAAGCAATATTCATCTCTCTCATATTTTCATTTAAAAAAATAAAAACTTTCTAGAACTTGAACTCTGGCAGTTTAGTGAAGGGAGTGCATGGCATTTTAACCTGCAGCAGCAGGTATCACAGCTGAAGGTGATGATTGATAACTGTCTTGCCACTCTGCTGTGTGGCAAGCTGTGACATCTGCCACACTGTCAACCTGCCATCTCAAGCTGTCGAAATATGAATGGTAATGGTTACTGTGGTGAAACTTCAGTTATAGACAATGAGCTCTGACATCAGCTGGCTGGATCTCCTTCCTTTCCAG
Seq C2 exon
GAAGTATATGGTGCTGGTCCCTTCTCAGCTCTACACTGAGACCCCTGAGAAAATCTGCCTCCATTTATACCATCTGAATGAGACAGTGACCGTTACAGCTTCCTTGGTATCTCAAACGGGAAGGAGAAACCTGTTCGATGAGCTTGTGGTTGACAAGGACTTGTTCCAATGTGTTTCCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030131:ENSMUST00000081777:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCCGGCTGTAGAGGACTC
R:
AATGAAGGAAACACATTGGAACA
Band lengths:
353-1714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types