MmuINT1023740 @ mm10
Intron Retention
Gene
ENSMUSG00000030131 | Mug2
Description
murinoglobulin 2 [Source:MGI Symbol;Acc:MGI:99836]
Coordinates
chr6:122075145-122075621:+
Coord C1 exon
chr6:122075145-122075321
Coord A exon
chr6:122075322-122075533
Coord C2 exon
chr6:122075534-122075621
Length
212 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
CCCAAAGCCTTCTATTCCAGGTT
3' ss Score
5.55
Exon sequences
Seq C1 exon
GTGATATCTTGAGTTCAGCCATAAAAAACACACAAAACCTTCTCCATATGCCCTATGGCTGTGGGGAGCAGAACATGGTCCTTTTTGCTCCCAACATCTACGTATTGAAATATCTGGATAAAACCCAACAGCTGACTCAGAAGATCAAGACTAAGGCCCTCGGCTTCCTTAGAGCTG
Seq A exon
GTCAGTAAGGCTCAGAAACTCTACCTTGTTCTTGTAAATGTTCACTCCAGAAATGTCTAGAAATGGGGTAGCATTGGAGGGGAGAGCAGAGCACTGTTTTTGATCAGTCCTATAAGCCAGGGTATGTGAGGGCCTTTCTGCCTTCAGATTTACAGTCTGCCATTCTCTGATGTATCATTTCTTCAGAACACACCCAAAGCCTTCTATTCCAG
Seq C2 exon
GTTATCAGAGAGAGCTGAACTACAAACACAAGGATGGCTCCTACAGTGCCTTCGGGGATCAAAATGGCGAGAGAGAGGGAAACACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030131:ENSMUST00000081777:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATATCTTGAGTTCAGCCATAAA
R:
TGTTTCCCTCTCTCTCGCCAT
Band lengths:
261-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types