MmuINT1026373 @ mm10
Intron Retention
Gene
ENSMUSG00000004630 | Pcp2
Description
Purkinje cell protein 2 (L7) [Source:MGI Symbol;Acc:MGI:97508]
Coordinates
chr8:3623371-3624632:-
Coord C1 exon
chr8:3624508-3624632
Coord A exon
chr8:3623559-3624507
Coord C2 exon
chr8:3623371-3623558
Length
949 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGACCCTTCTTCATCCCCAGGAT
3' ss Score
11.39
Exon sequences
Seq C1 exon
AGGGTGGCCCTGCTCCAGAGATGGACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAG
Seq A exon
GTAGGTGATGTCCAGATTACCTGTGAGACTCCACATAGCTCTCTAAATCTATGACCTGTCTCTAGGCAGGAAAGGAGAGGACCCTATGAACACGTAAAGTGCTATGGGCTTAAGGTCAGGTGGCAGGACTCATGCTAGTGCAGAACTATGGCTGGAAATTACAGTTCCTGCTCCAACATCTGTATATTTGGGAGAGGCCACAGGGAGAAAACAGGCAGTTTTCCTGGAAGGCATATGAATGCATACCCCTATAAATCAATGAAGAGTAGGGCTTCTGTTTGGGAGTGTTTTGCTTTATTGTTTTTGAGACAGGGTTTCATGTAGCTCTGGCTGGCATGTTCTCCTACATGTGCATCCTGGGTTCTGGGATAACAGGTGTGAGTCACCATGAGTGATGTATGTGGGTAGGGATAGAACCCAGGGCTTTGATGCAGTCTCTATCAACTGAGCTCCAGCCCCAGCCCTATGTCTGTGTACATTAGCATACATGTTTAGAGCTCCGGGCACACGTGTGCACACGCAGGTGGAGGCCAGAAGTCAATCTCCTGCCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGTAGATCAGGCTCTCTAGCTAGGAAGCCCTTGGGATCCTCCTGACTCTTAAGCACTGAGATTACAAGTGCATAAACCCACACCTGGCTTAAACTCAGGTCTTCAAATGAGCATAGCAAGGATTTCAATGACTGAGCTATCTTCTCAACTCAACTGTTTGTTTGTTTGTTTTAGTATTTAGCTTTGAACTCAAAATAATCCTCCTGCCTGTTTCTTGAGTACTGGGATTACAGGTATACACTAACAGGCCAATGTCTGACCAAATACCACCACCCTAATTAGCAGACGAAAAAAAAACATTGTTTGGAGGCACTTCTGACTTGCACTTTCCTTGGTCCCCTCCCTCCGTCTGACCCTTCTTCATCCCCAG
Seq C2 exon
GATGGAATGCAGAAACGACCTGGGACCCTCAGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCACTGGCCCCTGAAAACAATAAAACACTTGGCACTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004630:ENSMUST00000136105:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=54.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCTGCTCCAGAGAT
R:
TTTGTTGCTAGTGCCAAGTGT
Band lengths:
310-1259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types