MmuEX0034057 @ mm10
Exon Skipping
Gene
ENSMUSG00000004630 | Pcp2
Description
Purkinje cell protein 2 (L7) [Source:MGI Symbol;Acc:MGI:97508]
Coordinates
chr8:3623371-3624632:-
Coord C1 exon
chr8:3624508-3624632
Coord A exon
chr8:3623696-3623754
Coord C2 exon
chr8:3623371-3623558
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTGTTTGTTTTAGTAT
3' ss Score
9.53
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
AGGGTGGCCCTGCTCCAGAGATGGACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAG
Seq A exon
TATTTAGCTTTGAACTCAAAATAATCCTCCTGCCTGTTTCTTGAGTACTGGGATTACAG
Seq C2 exon
GATGGAATGCAGAAACGACCTGGGACCCTCAGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCACTGGCCCCTGAAAACAATAAAACACTTGGCACTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004630-'5-9,'5-8,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=54.8)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTCCAGAGATGGACAA
R:
GTCCCAGGTCGTTTCTGCATT
Band lengths:
144-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types