MmuINT1027855 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128487881-128489147:-
Coord C1 exon
chr6:128488906-128489147
Coord A exon
chr6:128488100-128488905
Coord C2 exon
chr6:128487881-128488099
Length
806 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGCATCTTTCTTTTTCTCAGGAT
3' ss Score
9.92
Exon sequences
Seq C1 exon
AGGATTCGCTGCACTGGCAACGCCCTGGGGATGTTCAGAAAGTGAAGGCCTTATCTTTCTATCAACCTCGGGCCCCTTCTGCCGAAGTGGAGATGACAGCTTACGTGCTTCTCGCCTATCTAACCTCTGAGTCTTCCCGGCCCACACGGGACCTGTCTTCATCAGACCTGTCCACAGCATCCAAGATTGTGAAGTGGATCAGCAAGCAACAAAACTCCCACGGGGGCTTCTCCTCCACTCAG
Seq A exon
GTCTGTGGAGAGACCCTACGAGGGAAAGAGAAATCAATTAATCTGCATATAAACACAGACATATTCTGGGAGTTAGATAGCTGAGTCATGGATGCTTCTAACTCGTATTTTCTCCATTCCTCCATCACCAAGTCCCACCTAACTCACATATGGAGCGCTGCCCAGTCCTCCTTACACTCCCCTCACCTTCTCCTCACTCGGGTCCTCAACATCACCATGGGTCAGTTTCCCAAAGTACTGTTTTTATGTAAAAAAACAAAAAACAAAAAAACAAAAAACAAAAAAAGACCTACTTCCATGAGAAAAAAATTACTTGATTTTCATTCACAGACTAAAATTCTCTAATATTCTACCTAAGCTACTTCCTGTCCACAGTCATCACGGGAAATATGCTGCGTGGTCCTTACGCTGTTTCTGGAACAGACTTGCTGCCATTTCTGAGACCACTTGAAACATTCCAGCTCCTCCACGAGGCTCCTTTTCCCTTCTATATATATATTTTTCACTATTCAAGAATTATCTTATTTCTCACTTTTAGTCTTCTTTTTCTCTTAACCTACATTTTCTTCTTCTCCACTTCTAACTTGCAACAAATATTGCAACAAAGATTTATAAATTACTGGGGTCATATTTCTGTATATGTTGTAAATTTGTGTAAATGATAAAACATATTCCTCCTGAAGTAGCTAGATTGGGTCCCCATTAGTATGCAGGCCTGAACCCTGAAGGGAAGCTAACACTGTACATTCGGTGTGGCCTTGCCATGGCTGCTTTCGCTGACATTTCTGCATCTTTCTTTTTCTCAG
Seq C2 exon
GATACAGTGGTGGCTCTCCAAGCCCTCTCCAAATATGGAGCTGCCACTTTTACGAGAAGTCAGAAAGAAGTGTTGGTCACCATCGAGTCTTCAGGGACCTTCTCTAAGACTTTCCATGTTAACAGTGGCAATCGCCTGCTGCTGCAGGAAGTCAGGCTGCCAGATCTGCCCGGAAATTACGTCACCAAAGGGTCAGGATCAGGATGTGTGTACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(30.4=100)
A:
NA
C2:
PF076789=A2M_comp=PD(4.9=17.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCGAAGTGGAGATGACA
R:
TTGGTGACGTAATTTCCGGGC
Band lengths:
353-1159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types