MmuINT1029397 @ mm10
Intron Retention
Gene
ENSMUSG00000112830 | RP24-98A23.2
Description
NA
Coordinates
chr12:80190160-80191428:-
Coord C1 exon
chr12:80191286-80191428
Coord A exon
chr12:80190363-80191285
Coord C2 exon
chr12:80190160-80190362
Length
923 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTCTTTCTCTCTCTCATAGAAA
3' ss Score
11.44
Exon sequences
Seq C1 exon
TTTGAGTTGGCTCTGTACTGCTCTATTCTCTCCTCAACCTCTTCTCCTTCTCTGTGCAGATGTGTAGGCACGCTAAGGCCGGAGGGGAAGGCCATGTGACCTAATGTTTCATGTCACTGCCACGCCTTCTCGGTGCGCAGAAG
Seq A exon
GTGAGCTCGCCCTTGGCCTTGCCCACTCTCCCGGCTGCCCTTTGGCCCATCTTGTCCCCCTCCACGGACAGCAGTAGTAGTTCCCGAGTGAGAAAGCGTTAGACGCTCTCAGAGCCCTGACAAGCACACTTAGGGATGGCAGAGAAGCCCAGCCTCTTGGCAGCCTTCCTTTTTGTTTCGGTGAACACTGGGCATAGTGGACCCTCCCCAGAGGGGAAGGCAGACAAGCTGTCAGTGCCTGAATCCTAAGCCATTCCCTTAAATACCCATGATTCCTGTCACTTCTGAACCTTCCTTCTTCCTGCATGACTAAGGCCATCAATCTAGGCAGCAGCCAGGGCAGGGAGAGGTCTTCTGCCTTCTCCCTGATGTCTAGGCCAGAGTCCTGATGCCACTCGCCAGCCAGGCCTTTCATGGATAGTTAGTTGCAAACAATATAAGAATACCACTTGGGTGCCATAGACTGTGGAGCTTTGAGCATTCATTACTAAAACTACCCTGCAGAGAACAGGGAAGCTATTCTTTTTTCTTTTCTTGTTTTTTCTTTCTTTTTTCCCCCATTGGTCTTTTTGTTGTTTTTGTTTTGTTTTGTTTTTTGTTTGTTTGTTTTTTATTTGTTTTTGTTTTTTAAGACAGGGATTCTTTGTGTAGCCTTGGCTGTTCTAGAACTCAATGCGTAGACCAGGCTGGCCTTGAACTCAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGGTTAAAGGTGTGCAACCACCACCATCTGGCTTTTTTTTTCCCCCTTCATGTTGGTGCTGGGGTTGAACACAGGGCCTTGTGCTTACTAGATAAGCATTCTATCACCAAGCTTCATGTCCAGCAGTAAAAATGTCTTATAAAAAAAAATCAGTGTGCCTCCCCCACCTCTCTCTTTCTCTCTCTCATAG
Seq C2 exon
AAATACCTTTAGGAAAAGGCACCTCTAAAAATTGCCCAAAGACAACCAGATGAGCTGGCAGCAGCCCTGGTACCCAGCGGATGGGCACCTGGACCTGCCTTTCTACTGACTGCAGAGGACGCAGCCCTTCTGTTGGCTCCTCAGTGGCCAGCCTCCAGCTTCCAAGGGATCCTCCCTGCTGGCCTCCCAATTTTTCCTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000112830:ENSMUST00000220316:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTGGCTCTGTACTGCTCT
R:
CAGAGGAAAAATTGGGAGGCCA
Band lengths:
342-1265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types