MmuEX0003621 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80184807-80192453:-
Coord C1 exon
chr12:80192368-80192453
Coord A exon
chr12:80191286-80191369
Coord C2 exon
chr12:80184807-80184899
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTTCTCTGTGCAGATG
3' ss Score
12.31
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAG
Seq A exon
ATGTGTAGGCACGCTAAGGCCGGAGGGGAAGGCCATGTGACCTAATGTTTCATGTCACTGCCACGCCTTCTCGGTGCGCAGAAG
Seq C2 exon
GCAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (disopred):
C1=0.000 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NO
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
ENSMUST00000021554fB295
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCCCGGCCAGATG
R:
ACTGGCCAGCTTCTCATAGTCT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types