GgaEX1006127 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27548717-27555736:+
Coord C1 exon
chr5:27548717-27548802
Coord A exon
chr5:27550221-27550223
Coord C2 exon
chr5:27555644-27555736
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACGCCTTCTCAGGGGCACAGAAG
3' ss Score
-3.71
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACATTGTTGGAACTGCCCGTCCTGACGAGAAAGCCATCATGACCTATGTTTCTAGCTTCTACCACGCCTTCTCAGGAGCCCAGAAG
Seq A exon
AAG
Seq C2 exon
GCGGAGACAGCAGCAAATCGTATTTGCAAGGTTCTGGCAGTCAACCAAGAGAATGAACAGCTCATGGAAGACTATGAAAAACTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NO
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
ENSGALT00000015425fB4682
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTTGGAACTGCCCGTC
R:
TACGATTTGCTGCTGTCTCCG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]