MmuEX0003621 @ mm9
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:81285794-81293440:-
Coord C1 exon
chr12:81293355-81293440
Coord A exon
chr12:81292273-81292356
Coord C2 exon
chr12:81285794-81285886
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTTCTCTGTGCAGATG
3' ss Score
12.31
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAG
Seq A exon
ATGTGTAGGCACGCTAAGGCCGGAGGGGAAGGCCATGTGACCTAATGTTTCATGTCACTGCCACGCCTTCTCGGTGCGCAGAAG
Seq C2 exon
GCAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'16-9,'16-8,17-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (disopred):
C1=0.155 A=1.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NO
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCCCGGCCAGATG
R:
ACTGGCCAGCTTCTCATAGTCT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types