BtaEX0002283 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81039948-81046958:-
Coord C1 exon
chr10:81046873-81046958
Coord A exon
chr10:81045659-81045742
Coord C2 exon
chr10:81039948-81040040
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTTCTCTGTGCAGATG
3' ss Score
12.31
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACATCGTCGGAACCGCCCGCCCGGACGAGAAAGCCATCATGACTTACGTGTCCAGCTTCTACCACGCCTTCTCTGGAGCCCAGAAG
Seq A exon
ATGTATAGGCACGCTAAGGCCGGATGGGAAGGCCCCGTGACCTAATGTTTCATGTCACGGCCACGCCTTCTCGGTGCGCAGAAG
Seq C2 exon
GCCGAGACAGCAGCCAATCGCATCTGCAAGGTGCTGGCCGTCAACCAGGAGAACGAGCAGCTCATGGAGGACTACGAGAAGCTGGCCAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'23-11,'23-10,24-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.786 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NO
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
ENSBTAT00000024301fB363
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGTCGGAACCGCCC
R:
CCAGCTTCTCGTAGTCCTCCA
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development