DreEX0010935 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36213885-36223874:-
Coord C1 exon
chr13:36223793-36223874
Coord A exon
chr13:36218967-36219052
Coord C2 exon
chr13:36213885-36213977
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTTTCCCTGGGCAGATA
3' ss Score
11.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGACCCCATGACGAATCTGAACACGGCCTTCGATGTTGCTGAGAAGTATCTGGACATCCCGAAGATGCTGGACGCAGAAG
Seq A exon
ATATCGTTAGTACGTTGCGTCCCGATGAAAAGGCCGTCATGACGTATGTGTCATGTTACTACCACGCCTTCTCAGGCAAACAGAAG
Seq C2 exon
GCCGAAACGGCAGCCAATCGGATCTGCAAAGTGCTGGCTGTCAATCAGGAGAACGAGCAGCTGATGGAGGACTATGAGAAACTAGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219_MULTIEX2-2/2=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACCCCATGACGAATCTG
R:
TGGCTAGTTTCTCATAGTCCTCCA
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]