MmuINT1030792 @ mm10
Intron Retention
Gene
ENSMUSG00000026927 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
Coordinates
chr2:26388492-26389304:-
Coord C1 exon
chr2:26389149-26389304
Coord A exon
chr2:26388561-26389148
Coord C2 exon
chr2:26388492-26388560
Length
588 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTGACCATGTCTTTTTGCAGGTT
3' ss Score
10.08
Exon sequences
Seq C1 exon
TGGCTTCCGGCCCGCCGAGCCGGATGAGGCAGGGGCCGGCGACTGCCTTGCGGGCCATGGGGCCGCGGCCGGGTTAGGGCGCGGCGATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCTCTATCGCGGACGCGGAGCCTTGTGGTTCCCGACG
Seq A exon
GTGAGCGGCGCGCGGCTGGGGCAGGGCCGGGGGGCGCGGGCGGCGGCGGCCCGCGGTGAAGCCGCTCTCGTTGTCGCTTACAGCTCCTGCGTTCTATGAGCGCCGGTCTTGTCTCCCCCAGCTAGACTGTGAGCGCCCCCATGGCGGGGACCTGCACCCCCATCTCTTCGGCTTTCGGCCGACGTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCGGTAGGAGACACAGGTGAGAGTCGGTCGGGGCGCCGGCCACAGTGCGGAGCTGGGCAGCGCGGGGAGCCCTCCCCACAGCCCGCCCGCCCGCCTCAAGGCAGGAAGGTAGTGCCTGGTGGAGCTCGGAGGCCACTTAAGCCCACCGGCTTGGGCAAGGCCAGGGGCTGGACCTAGCGGGTCTGCGTTCCACCTGCAGCTGCTCTTAGAGCGCGCAGGGATGTGTAGTTTACCGCATCCAGCCTCAGAAGACAGCTTTCTAGTCCCAGACTCAGTGGGAGTCAGGCGTCTGCGGTCTTCACCTCCCTGGACAAACGCTGCAGTCATAAGGCTTGCTGTGATCACGGTGAGCTGACCATGTCTTTTTGCAG
Seq C2 exon
GTTTTGGCTATGGAAAGGGGAAATGTACTAACCAAGGTCCTTCGGGAGCCCCTGAGACGCGCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026927:ENSMUST00000028293:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types