MmuINT1035326 @ mm10
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137426164-137428011:-
Coord C1 exon
chr5:137427794-137428011
Coord A exon
chr5:137426306-137427793
Coord C2 exon
chr5:137426164-137426305
Length
1488 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TTTCCCCGTGGCTTCTTCAGGCA
3' ss Score
9.36
Exon sequences
Seq C1 exon
CTCTGCAGTGCCCAGCCCACAGCAAGTTCACAGACTGCCTTCCCCCCTGTCATCCTTCCTGCTCTGACCCCGACGGCCACTGTGAGGGCATCAGCACCAATGCCCACTCTAACTGCAAAGAGGGCTGCGTGTGTCAACCTGGCTATGTGCTGCGCAACGACAAGTGTGTGCTCAGAATTGAGTGTGGCTGCCAACATACCCAGGGTGGTTTCATCCCT
Seq A exon
GTGAGTTGGCATAGAAAGTGGGTTTGAGGGTGCTTGGTGGGTCAATCTCTTGGGTGTATTAATCAGAGTTTTCTAGAGTAACAGAGGGTATGGAATGACAGTGTATAGAAAGGGAATGTATTAGAGTGATTTACACTCTGTGGTCCAGCTAACCCAGCAATGGCTGACTATAAATGGAAGGTTCCAGAATCTAGTAGTTGCTCAGTCTATAAGGCTGCATCTCTCAGGCATATACTGATTTTAGTATATCCCAGAATCCCACAGAAGTAGGCTTTAATGCCAGTGAAGGAATGGACTTGCTAGAGGGGCACTCACACAGAGAGAAAGCTTCCTCCTTCCATGTCCCTCATATAAGCTGCCAGCACAAGGTGCGGTCCATATTAAAGGTGAATCTTCTCGCCTCAAAGATCCAGATTGGAAGTGGGTCTTCCATCTTCAAATGATTCGATTAAGAAAGGAAATCACTCATAGGTGTGCCCAGTCATTTGGGTTTTAGTTCATTCCGGATGTAATCAAGTTGACAACCAAGAATGGCCACCAATCATAGTGCAACTATGAGGACCTGGGTTCAAATTACCACAGCCCACAAAAGCTATTATAGTGGCTCTGAACTCACAGTGCTCCTGGTAGTTGAATACTGGTGGGTCTCCAGGAGGTGGGAACTAACTAGTCTTGTGGAGAGCAGCGCATGTATGTATATATGTATGTATGTATGTATGTATGTGTGTATGTGTGTATGCATGCATGCATGCAAGTATGTATTATGTATGTATGTATTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTTTTAAATGGGTTTGGTGGCCACTTTCTAGTTTCCTCTGCTTCTCTCCAACCAGGATGTCATTTCTTGGTTGGTCAGGGCCTGCCATAGGATAGGTAGGCTGTCTGTGAGCTGCACCCCATGCCCTTTACTGGGGGATTCTAGACAGGTCTTTTACTCTAGTACCTGCCCTACCCTCACCTCCCACTCTGCCTATCAGTTGGGTCCTACTCTGGTGTTCTATGGCTGAGTTACATACCAGGCTTCCATTGGAAGATTCTAGGCCTCAGCTTTAACAGCCAGTCATTCCCTTCACTAGGGAGGCACTCCCACAGGAGGATTCCAGGCAAGCACTCTACCCACAGCCTCTGGTGCAGCATGTAGTCGTTTGCTTGCTTTAGTTCTTTTGAGAAAGGATCCCACTGTGTAGCTCTGGCTGACCTAGAACTTACAGAGATCCGCCTGCTTCTGCTTCCTGAGTGCCTGGACTGAAGGCATCGTGCCACCACATCCTGATAAGATGTAGAGGTTTCTTGTTCCCCCCGCTGCGGGTGATTGACACACTAGATGCTGAATCTACAAATAGGGAGGGCAGATCGAAGCCCTTCAGACCGTGGGCGTGTCTGTATCAATTGAACCAGCCTGTTCTTCCTCATTTTCTTTGTTTTCCCCGTGGCTTCTTCAG
Seq C2 exon
GCAGGCAAGAGCTGGACTTCCAGAGGCTGTTCCCAGAGCTGTGACTGCATGGAAGGGGTCATTCGATGCCAGAATTTCCAGTGTCCCTCGGGGACTTACTGCCAGGACATTGAGGATGGCACCAGCAACTGTGCCAATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173:ENSMUST00000117564:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
NA
C2:
PF127142=TILa=PD(78.6=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGCAAGTTCACAGACT
R:
CAGTTGCTGGTGCCATCCTC
Band lengths:
334-1822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types