MmuINT1035487 @ mm10
Intron Retention
Gene
ENSMUSG00000053985 | Zfp14
Description
zinc finger protein 14 [Source:MGI Symbol;Acc:MGI:99160]
Coordinates
chr7:30043530-30044808:-
Coord C1 exon
chr7:30044720-30044808
Coord A exon
chr7:30043657-30044719
Coord C2 exon
chr7:30043530-30043656
Length
1063 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTGTTTGTTTGTTTTTCAGGGT
3' ss Score
11.41
Exon sequences
Seq C1 exon
CGTTGCTTGTTGACCCCCAGTTTATCACAAAGAAATACTGAAAAGAGCCGACCGGTTCCTGCAGTTCTAACACTATGGCCCTGGCTCAG
Seq A exon
GTAGGTTAAGGATTTTCTCTATTCCCCCAAGACTAGTCTTGATGTATGACCTCCTGTCTGCCTCCTGAGGGCTGGAACCGCAAGTGTGCACGGTACACGGATCACATGGTACCTATTTCCTCTGAAGCACTCGGTTTCCAGACGGTTGAACACATACGGTCACTCCTTTCCCTGAACCTGCTCCTCTAGCGAGCTCTGTGCAGCACCCTCCCCAGTGCTGAGACAGAGCCCAGGGCTGGGCATGCTGCCTCCAAGGCTGAGCCTCCCCCACCTCCTGCACGTTGTTTCTTTTAGAGCCATGGAAATCGAGCCCAGGTAAAACCCATGAGAAACTCTCAGATGTGCTCTGCAGAATGTTCCTCTCTTACTGTTTCCATATGGGACATCTTTTTGGTTTAATAATTACAGATTTTTTTCAGAGAATATTATTTCCTCCCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTGGTACACAAGTAGAAGTCAAAGGACATTGGTTTTCTGTTTTGAACTTAATAAAACTAAATACCATGTTTCTGTAGAAATTATAATGGAAACACATTGTGTATATAGCATATAACTGCTGTGCAGTTGGGTTCATTTGTGTGTCACATCATATTCATTTCCAGAATGAATGAAAAAAAATCTAATCTTGGGCAGCAAGATAGCTTAGAAGGCAGCAACGAGGATCTGACATGGCAGAAGGAACCGTTGTGGGTTGTCCTCTGACCTGCATACTTGTGCTATGGTATGCATGTGTGTGCACACACATATGAAATACACATTTATTTTAAAGGTTTGATTTGTGTGCGTGTGCAGGGCCGTATGGTAGCATATCATCCACCACTCTGCTGCTGAGACACGGAGTCCCTTGCTGTCTCTGTCCCTGTTGTCCTGTTCAGCTGCTTATGTTCTGTAGGCTTCCCACTTCACAGTGGGGCTGTGTGGTCCTCCTCCACTCTCCCCTTAAATAAAAAAGGAATTTTTTCATGCAGGACCACAGGTTTGTTTGTTTGTTTGTTTGTTTTTCAG
Seq C2 exon
GGTTTAGTGACGTTTGGGGATGTGGCTGTGGATTTCTCTCAGGAGGAGTGGGAATTCCTGGACCCTGCTCAGAAGAACCTGTACAGGGATGTGATGTGGGAGACCTATAGCAATTTTATTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053985:ENSMUST00000207072:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTTGTTGACCCCCAGTT
R:
TAAAATTGCTATAGGTCTCCCACA
Band lengths:
206-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types