RnoINT0168671 @ rn6
Intron Retention
Gene
ENSRNOG00000030932 | Zfp82
Description
zinc finger protein 82 [Source:RGD Symbol;Acc:6499485]
Coordinates
chr1:88356846-88361712:-
Coord C1 exon
chr1:88361619-88361712
Coord A exon
chr1:88356973-88361618
Coord C2 exon
chr1:88356846-88356972
Length
4646 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CACAAGTTTCTCCCCCCCAGGGG
3' ss Score
8.09
Exon sequences
Seq C1 exon
CAGCTTTGCTTGTCTGAAACCCAGTTTTCTGTAAAGAAATACTGAAGAAGAGCCAACCGGTTCCTGCAGCTCTCACACTATGGCACGCGCTCAG
Seq A exon
GTAGGTTAAAGATTTTCTCCATTCCCCCAGACTGGCCTTGATGTTTGATCCTACTGTCTGCCTCCTGAGTGCCGGAACCACAAGGGTGCACTGCACACGTGGTGCCTATTTCCTCAGAACACTCGGTTTCCTAACAGTCGCTCCTTTCCTTGAACCTGCTGACCTACCGAGCTCTGTGAGCGCCTCCCCAGTTCTCAGAGACAGCCCATTGCTGTACACGCTGCCTCCAACCAAGGCTCAGCCTCCCCCATCTGCACATTGTTGCTTCTAGAGCCATGGGGATCGAGCCCCGGTAAAACCCATGAGAAAACCCCAGATGCGCTCTGCGGTCCCCTCTCAGTGTTTACCCGTGGGGCATCTTTTTGATTTAATAATTACAGGTTTTCTTTCAGAATGTTTTTTTTTTTAAGATTTATTTATTTATTTTATATACAGCATTCTGCCTACATATGTGACTGCAGGCTAGAAGAGGGCACCAGATCCCATTACAGATGGTGGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCTCAGAATGTTTTATTCTCATTCTCATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCACATGTGCATGTGTATTGTGGTGCACATGTAGAGGTCAGAGGACACTGGTTTTCTGTCTTGAATTTTATGTGGGTCAAATCCAGGGATCAAATTCAGCTTTACCCACCGGGCCATCTGGCTAACCCTAATTTTTAGTACTCAAATTCCAGGGGAAACTTCTTTTCTCTTATTTATGTCCCCAGTACAGTGTGGCATTTTATCATCTTCATTTTTTAAGATGTGTGCATCTGCCTATGCACACGTGCATGGAGGCCAGAGGCTGAGGCTCGGTGTCTTTCTCAGATCGGGTTTCCACCTTATTTTTGAGACAGTTTCCCTGGTCATGGAGTTCAGTCATTTAGCTAGACGCGCCGGCCAGCAAGCCCCAGGAGTCTCTGTGTCCCTTCTCCAGTAGTTACAGGACCATGCCTGGCCTTGTACATGAGGGCTGGGAGTCCAAGCCCAGATCCTCATGCTTTACTGACTGGGCTGCCTCTCTAGTCCCCCAAATGGCACTTCAGCTGTCAAGTGCAAATTATAAATGTGTAGCTGAGTGAATCTTCATAAACCGAGCCGCCTTTGCTTCTAAGTCAAGAGAGGGATGGCCTAGCAAGCACTTCAGCTGTCCCCTCAGTCCCTTCCCATCCAGACACCCAGACAGTCTCTTCACTTTAAGCACCACAGATTTACTTTTCCTATATTTGAACTTATTTTTCTTTTTTTCCTTGTTTTTTTCTTTCTTCCCATCCCCTTTCCTTCCCAGACCCACCCCTAGTTTCACCTCCTCTCTCTTCCCTTGTCCTTCTCTCCCCTCTGCTCCCTTCCCCTCTGTTCTCTTTGACAGGGTCTTACTGTGTAGCCCAAGCTGTTCTTGAACGTGCAATCCTCCTGTTTCCAGTTTAGACAAATACAGTGACTACCTAGCTTTAGTTTGTAACCATGAACTTTAAATGGAATGATTTAGCTCAGTACATTTAAAAAAAAAACTGTTCATGAGAGTCTAATTATATTCTATGTAGAATGCTAAGCCACCAGACCCCTGTGGCTGTCTTAAAGTGCATGTATCATTAATGTGAACATATAGAAAGACACTGGACACCCACCCCTGGCTTCCACATGTGCTGAGACCTTGAGCTGTCCGAGGCTTTACCATTAGATGGTTAGGTAGGGATGTAACTGAACGCTGACGTGATAAAAATCTAAACATCCATGTGAGAGTGGACATGGAGGTCCACACCTTTAATTCCAGCTCTCAGGAGACAGAGGCAGGAGGATCTCTGTGAGTTCGAGGCCAGCTTAGTCTGCATAGAGTTCCAAGCTAAGGCAGAGCTACAGACCCTGCCTGGAAAGTTAAAATTAAACGAATCATTAATTAGTATGTTGTCGTCTTGTTAGGGCCCATGGCCTAGCCGTGGGCTCCCTGCTTGTACCGGCTGTGCATCCTGTGGCCGGTCCACATGCCTTCCTTCCGAGCCTGCTCCACCACCTGCGGGTTACTTCCATCTCCCCCTCTTAAACCTAATAGGTTTCAGGACATTCATATGAGCCATTCGTATTTCCTGTGGGAACCGGTGACACCTAATCCTCTTTCAAAGTCTCTCCAAGGGTCTGTCAATGGCTTTTTACAATGGCTTTTCCTCCTAATACAGCTAGATTCCAATAATCAAGACTGGACTATTAATTTATCAAGCTTTAAGGGCACAACAACGGAACACTCAATTTTGTTTTTCTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCGGAACACTCTATTTTAATCCTCTAAGCTAATCTGGCTGCCTCCCAGTCAAAGTCCTCAAGATAATTGTATTTTAGTATAGATCTGGCTCTCTAGGCTCCAGGTGTTTTTTCATGTTCTCCTGGATTCTTTCTCCATGGCTAATCCCCACTTCCTTTCTCTCTCTGCTCCTTCCCTGGCTGGGAGGACGTCTAGCTGTATTGTCTCCCCTGAACAGTCATTGGCCAATCAGCTAGCTTTATTGACCATTCAGGGAATAATTGGGGAGCAATATTTATACAACATTGAGATAGGAGATTCTTAGACTAAGGATTGCAAGTAGATATGGGGGTTCAGAAGTCAGCATTTGAATAATATCAGGATAACCTTCATACAGTGCACAATAGCGTCATGCCTACATAGGGTCTTGTTCTCTTCCTTCCTGAGGGTGACCTTTTATGACCTTGCATGATGTGGGAAGCCTTCCCTGAGGCTATGAGTAGCCATTGTCAGTCTCAGCTGTGCCACATCAGCCTTTAGGTGGCAGACAGCGATGAGAACAGGAATATACACAAAAGACAAAGTCCCACGTCTGCCTTGGTCATGGTGCTACATCCCTACAGTCCCAGTGCTCAGAGAGTTGAAGCAGGAGGACCTCAAGTTTGAGACTAGCCTGAGTTCCATGGGAAGACCCTATCTCAAAAAGAAAAGGTGGATTTCTTCCCGAGAGAAGAACCCCTTAAGAAACCCTTGTGTGTTTTTATGGGATGTACTTGATTTGAGCAAGATTTCTCAACTTTGTGACCACTGACATTTTGAACCAGAAAAATATTATATAGCAGAGGATTATCTGTGCACAACAGGCCATGTGACAGTAGCTCAACAGGTCCCTGGAACACGCACACACCTTTCCCACTGTTGTGACAATCAGGTTGTATCCAAATATGCCTTTTTGGGAAACAAAATTGATCTTCGTTAAAAAACACTGTTGCTACTGAGCGTGGCGGCAATCTGACCCTTTGGGGACTGGAGGCAGGAGGATTACTGTAATTATGGCCTACATGGAGGATTTAAGGCCCACCTGAGTTTATCCCCTGGGTCTCATGTGGTGGAGAGAGAGCTGGTTCTGGTAAGTCACCCTCTGATGGATACACATATAACCAGTAAATACATGGATGAGGAAGAAAGGAAGCCACTGTCCAGGGTGCTGCCCGCAGAATTTTCATGACATAACTGCAACTTAGAGAAGACGTTCCGTGAGACCCACTAGGCAGGGCAGGGAAGATGATAATAGTTACATGAGTTTTTTGAAATTGTGCCAAGTTTACACATAATTGTCTGTCTGTCTGTCTGTTTCTTTGTTTTAGCTAGGGTCTTACTATGTAGCCATGACTGGCTGGCTTTGAAGTCACAGAGATCCTCCTGTTTCCGCCTTCCAAGTGCTCTCTCAAATATCTAAATGTTAGAAGGGACATTAGACATATTTAATGTAGCCAAGATGAGATCAAGTTTCCAGCAAAATTTTAAACGTTAAAGAATTGATTGTGCCAGGGAACATGTTTGCAGTACAACCTGGCTTTGAAGTGCACCTGAGTCCCTGTGCCTTGGATATTTTGTAGTGTATTTGGAATGAGTTGTTTTTTTTTTTGAAGAAAACTTTATCTATGTGTCTTCTTGATCTACGAAGCTGAATGCCGTGTTTCTGTACAATGTACAATGTACAATGGGAGCACATAGTGTGTATAGCAGATAACTGCTGTGCTGTTGGGTTCCTTTGTGGGTCTCATCATAGTCGTTTCCAAAGTGAATGAAAATCTAATCCTGGGCAGCAGATAGCTTGGATGGGGATCTGACGTGATATGGGGAGCTGGCTGTTGTGTGTTGTCCTCTGACCTGCGTGCATGTGCTGCGGGATGTGTGTATGTGCACACACATGGGAAATAAACTTGACTTATGTGCGAGTGCAGGACTGTATAGGAGCACATCACCACTCTGCTTCTGAGACACCGAGTCTCCTGCTGTCTCTGTCACAGTTACACTGTTCAGCCCATGCTGTTTGTGCCCTGTGGGCTCCCACTTCACAGCGTGGCAGTGTGGGCCTCCTTCAGTCTCCACTGTCTCCTTAAAAGTAATGAAAAAGGAATTTTCTCATGCAGTGCCACAAGTTTCTCCCCCCCAG
Seq C2 exon
GGGTTAGTGACGTTCAGGGATGTGGCTGTGGATTTCTCTCAGGAGGAGTGGGAATTCCTGGACCCTGCTCAGAAGAACCTGTACAGGGATGTGATGTGGGAGAACTACAGCAATTTTATCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030932:ENSRNOT00000033661:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]