MmuINT1035503 @ mm10
Intron Retention
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50905606-50906157:-
Coord C1 exon
chr11:50906086-50906157
Coord A exon
chr11:50905687-50906085
Coord C2 exon
chr11:50905606-50905686
Length
399 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATC
5' ss Score
5.91
3' ss Seq
CCTCCTGCTTTTCTTTGTAGTTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GCCTGGCTCGTTGTCTGTGAGCATCCTGTGCTCCCAAGAGGATCTCCTAGACTGGGTTTTAAAACTTTGTAG
Seq A exon
GTAATCTTTTTGTTTTTCTTTTTCTTAAAAGTTAAGCCTTCAGAATTTACATTTAAATTAGGCATCTAAATTTAATAAAGAATATATTGAACCTTACTAAGTTCTTTAATGGTGTTCTCAGTTTTAAAAATATATATATGGATTTATAAAGCATATGCTATTTGACACAATGCATATTCTATGACACCTTTAATGAATTAATGCTTTACTATTTTTTTTCTTATACAAACACTCTAAGATGAGTACCATTTAACAAATGAGGAGCCTGGCACACGCAAAAGTTAAGAAGCCTTCATAAAATCACACAGCTAATAGTGGTTGGAATCAAATTTGAGCAGGATAGATAATCTGGCCCAGAGTTATTACCTAACCACTATGCCCTCCTGCTTTTCTTTGTAG
Seq C2 exon
TTGGTGATGATGAAAATTAGTGAAGAATAAAGAAAGCAGATGCCCAGGGTCCAGAACCTAGACCAAGAACAAGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321:ENSMUST00000109128:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types