RnoINT0167841 @ rn6
Intron Retention
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36388137-36395547:-
Coord C1 exon
chr10:36395480-36395547
Coord A exon
chr10:36389752-36395479
Coord C2 exon
chr10:36388137-36389751
Length
5728 bp
Sequences
Splice sites
5' ss Seq
GTTGTAGGT
5' ss Score
2.38
3' ss Seq
TAAGTTTTACTTTTTTTCAGGCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCCTGCCATGTTGTCTTTGAGCATCCTGTCTTCCTCGGAGGATCTCCTAGGCCGGTTTGTAAAACGTT
Seq A exon
GTAGGTAATCTTTTTGCTTTTCTTTTTCTTAAGAATTAAGTCTTAGGGTTGGGGATTTAACTCAGTGGTAGAGCACTTGCCTAGCAAACGCAAGGCCCTGGGTTCGGTACCCAGCTCCGAAAAAAAAGAAAAAGAAAAAAAAAAAGAATTAAGTCTTTAGGATTTACATTTCAATTAGGCAGCTAACATTAATAAAGAATACATCAAACCTTACTAAGTTTTTTATGGTGTTTTCAGTTTTAAAAAAACTGTTAAGCAATTTTGCAGAATAACAAATGCTTTATTCTTTGTCTCACTTGGACTCTGAAGTATATGTAAACAGAAGGATTTATAAAGTATATGCTATTTGACACAATGCAAATTCTGCCACACCCTTAATAAATGAACGCTTTACTATTTTTTCTTTTTCTTTTATAAATACTCTAAGGTAAGTCTCATTCAGCCGACAAGGAGCCTGGCACACACAGAGGTCAAGAAGCCTTCACAAAGTCACTCAGTTAATAGTGGTTGAAGTCAAGTTTGAGCGGGATAGAAAATCAGACTCCAGAGTTACTACTTAACCACTATGCCTTCCTCCTTTTCTTTGTAGTTGGTGATGGTGAAAATTAGTGAAGAATAAAGAGAGCAGACGCCCAGGGTCCAGAACCTAGAGCAAAAGCAAGCATGCCCTGCACGGTCTAACCTCTACCCAACACTGACCCCTATTCTGATTTGTGATCATTTCCGTATAAGTCCCAGCTCTCTAGAGAGATGGAAGGGGGTTGATTAGGGTGGTATACAGGCTGTGGTCCAACTAGCTAATCCAACAATGGCTCTCTTGAAGGAAAGGCCAAAACCCCATGGGTCTGGGAGTGTCAGCTGCTCTTCAGTCTGTATTAGAACCGCAAAGAAGTAGGTTCTGACACCAGCAAAGGAAAGCCCTGGCAGCAGGGTGGGTGAGCTGTTAGTGAGAGGGAGGGCAAGCAGGCAGAAACAAAAGCTTCCTTCTTCCGTGTCCTTCATGTGAGCTGCCACAGAATGTGGCCCATGTTATCTCAATTGATGTTATATTACATGACAAAGAAATAAAGGAACACAAATATCAGTTAATGTATATGTATATATGTACAAACTCATCCTTATCAAAATAGGAAAGAAACACTCATGTCAATTGCAATTTGGTTTTCTGTCACGTGGCCTAACTACCCATGTTTCTTCTACCATCAGCAAGCACATCAGCAGGTCTTGGTCCTCTTCCTAGAGCAGTGACCCATACCTTCCTTCCTGAGGGTCTGGACCCTTTGTCATCCTGCCTGGATTAGGTTGCTGTAGTTTCTCATTGACTCTAATCACAAACCATGGTAGCACCAAGAAACACCCTAAAGGATCTCCGTCAGTCCAGACCTACTCTTTCTCATCTTCATTGTAGAGAAGCAATCCAATTTCTCCCTGGTAATCTGGATTAGTCACCCCTCCTAACACTGTTCTTCCTTTCTTAGCCTGTTGGCTTAAGAGGATCAGAAACCCAAAGTGGCCAGGGGGCGAGTCTGAGGTTCTAGCTCAGTGGAGTTTTGTTGTGTCCTGGCAGGAGCACAGCCCCACCTGGAACCAAAACTTCCAGGCCAGCAGAACTTAAGGCCATAGGAACAGGACACAGAATTTTTTTCAAACGGATCACTAGGAACTATTCCCATTTCCACACCCTTGATTCCTGGACTGATAATCCTGGCTGTGGGAGAAACTGCTATATTTGGGTGAAGATTAAAAGCATATACCTTCTTCTAGAGAACCCTGTTCCAGCCCTCCAGGCTGCTGCTACCTAATTGGCACTGTAACTGTGCCTTCAAAAGGCAATCCCATCATCCTATCAATCAGGCCAGCTGTGTAGGGATGCTGGATTCCATGAGCCTGTTGTCACCTTCTCTGGCTATGAGTTCCCTGGCTAGAACCAGTGCCATATTGAATAACATGACAGTGAAGAATGCTTTCTATCAGTCTACAAATGGCACTACTGGCAGCATTCCAAGCAGGAAGGGCGAACCCATAATCAGAAAAAGAATCTATTCCAGTTAGGACAAATCTCCTCTCCATGAAGGAAGTGGCCCCGATGTAGTCAAGTTGACAATCGAGATCAGCCCTCACAATACCCCTTTCTGGCTCTTCTTCACAGCGGCGCCGTTTATCTGGGCTAAAAGATCTTCCCCTGCACTTTTTGTTGGATTCCGGGTAGCAATTCACATATTCTCAGAGAACTTGAGTGGGTAACGGTGCTGCCAGAGCAAGCTGGAGCAAGACAGCTGCCAGCCTCTGTGCTACTTGTTGATACCACTAGAGAGACTCTCTCTGCAGTCCTTAGTGTTTGTTGGTGACTCTTGCTTGACGTCCGACTTCTCTGTTTGTTAAGGCAGGACAGCACGGAAGGGAAGAGCCCTGTTACACATTCTTCTCGCTTCTAAGCTTCTGCTTTACTGTTCCCCATGCTAATCCTCGCTATGTTAGTTTTGATTGACAGTGCTAAAACTGGTTCCCAGGTTGCAATTTCCTGTCCTCATTTCTCACTGCCTCTGGGACATTTTGTCTGTGATACGACATGGGATCCTATGAACCTGAGCGACTCCAGGGTCCCTTCTTCTGCTCAGTTACCTCTAGCAGGTCAACAGATTCTCTTCACCTTTCTCTGCCCAGCACAAATCCTCCACTTCATAGAAAGAAAATTTAGGAAAGAGTAGGGATGTTTGGGCCTGTTACATCTATGAGTAGAACTGTCTGCTTGAAAGTTAAGAAGCGAGGCGTTTAAAACAGCGTTGTCCCCCATTAAGAGTTGTGTTTTGTTCTTTATGTTGTGGATGAGGGTATCCCCTAAGGGCAGTTACAGATAATGTCTTACTCATTATCAGTTATTTTATCCTCTCTTAGATCTGTGAAAGCCCATTCCCAAAGAAACAAGTAAATCATTAAGGTAGTGTTAAAATTCATGGTTTAAACGTGTACGTGTGACCGAAGGGACAACACTTTTTTCATACTTTGGTATTTTCTTAGATTGATTTGGTGTAGGGTTGTAGGAAACTACTAGTAGGAATGCTGGATAGATGGGTATCTTGGCTTCTTTTCTGGTTGCTCTAACAAACATAGGGCAGGGAGAAGGTATTTCAGCTCACAGTAGCAGGTTACGGTCCATCATGGCAGAGAAAGCACAGTAGAAGGAGACAGAGACAGCTGGCCACGTGAATCTAGCAGAGGGTAGTAAGTGCAGGCCTGCTGGTCCTCAGCTTGCTATTCCACCTTGTAAAGGATTCCCTGCCCAGGGGACAATCCCATCCACAGTCTTCCCACATCAATTAATGTAATCAAGATAATCTCCATCGGCAAGTCCTTAAGCCACCCAACCTAGCAATCCCTCAGTGAAGCTTCCTTCTAGATAAATCTAGATTCTGCTAAGTTAACCATGTCAATGCTCACAATTATACCCCTTGTCAATATAATACCAAAACAAATCAATTTTAAGCCATAACCTACCCCTTGTCTCCATAGGCTCATTGCCATGTTATAAATGTATTCAATCTAACTTTAAAAGATTCTACAGTACTTAACAATCTCTTAATTGTGGGCACTCAATTCTTAAAAAGTTGCATTCTTACATCATATACTGATGGAGAAAACTGGGCATAAAATAATCACACCAAAGCAAATTACATTTCTAAAGCATGATGTCTGATATCTGAGGCCCTTAATTCAATGTTCTGGGCTCCGTGTGACTTCAGTATCTGCCCCTCCAGCTTTGCCACCTACATGTATCACACCTATACTGTCTTCTACGCAAGTTGTACTTCATTCCTTCAGCTCCCTTGGCAAATGACCCACAGCTGTGGCATCTCCGTGATCCTGTGGTTTCCACCATAACTAAGACATCCTTTTCACAACTTCATACAATAGTCGATTGAGGCTTCCATGCAGAGACTGATCTTGCCATACAGTTCATGGCCTCAACTAAAACCCAGGACCTCCCACCACCATTTCCATCTTTTTTGCCTTTCCAAGTAGCAGCCCATGGATTCTGCTGCCAGGTTGTGTGCCCAGCCCAGGAAGGAACATCACCCCCTTCCTTGAGAGCCTTTGTTGGGTGCCGTTTGCCCCTCATACACTCCCAGTGCAGTGCAGTTCTCATCTCTACAATGTTGTTGATCTCCTTAAGAAGTGCTGTTATAGTGGACTTGGCCATCTGTAACCTCAGATGGTTTTCCCCCCATCCACTTTGTTTCCCAAAAAATAATGACTCTGAGTCTCAAATGTATTTACAAATACATAGGCCACATAGCTAGGCCTATTCCTCAACCAGCTCATAACTTAATAGCCAGTTTGTGCTATCAGATTTAAGCCAGAAGGACAGTTATCTCTGTTCGGGTTTCATTCGTCTGTCTTCTTAGGGGCCCCAGGGAGAATTCCCTTCCATACATTCTCATTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCCCTCTCCCTCTCCCTCTCCTTCTCTTCCTTTGCTCCCTCCTCTACCTCCCTCTCTGCCAATGTCCCACCTTCTGATCCTGCCTCGGCCCATTGCCCAGAGGTTGTACTGATAGGTGAATGCTTTTACATAGTGTATAGGAGATTATTTCTAAAAAGTGCCACTCTTTTCTAAGACATAACCTAGATGCTTTCCTGTGCTCAATTTACCCTGCCACTGTCCTCATTAATTAGTCCACTGTCTTGAAATACAGCTTTATTCGTGTTCTCAGGATATGGGCAGAATGAAGACAGACATTTCAACAAAATAGGATGCTAATGGCCCCTAGCCGGTCCCTGATGGAATCCTTGTTTCCCTGTGAAATCTTATGGTCCATGTTTACCTCACTCTCTCCAGAATGAGTTAAGCTCTGATCCCTGCATTCAGTGTACCAGACTCTTGCACATTCTAGCCACAAATGTGTCCAAAGGTGTAAGAATGACACAGTCGGGTATACACACTGAAGGCTCCACTTCTGGTACCAGTTTCTCTCTTAATTACTTCTCTCCTGATGTGATAAAGTACTCTGACAGAAGCAACTTAAGAGTTTATTCCAATCACAGTTCACAGTAACGTCCTCTCATGGTAGAGAGGTCAACAGTGGCAGATGGCTGAGGAAGCCGGCCACTTTACATCTAAAGTCAGAAGAGAACAGTGAATGCATGCTTGCTAGTGGTCAGATTCCTATCTATCTCCATCTTATACAGGATCCCCTGGCCAAGAGAAGGCCCAGGTGAGCATTTTCACATCAATTAATAGAATCACAATAATCCTCCACAGGTCAACTCAATCTAGATAATCCTTCATTGAGATGGCCTTCCCAAGTGACTCTGAATTCTGTCAAGAGGATTAAGTAATCATCAAAATACAGTACATCATTCTCGCCTGCTTTCCTTAGCCAGTCTCTTCTGTGTATTTTCCCCTGGCTCTGCATTAACCGTCCTGGATGAGCTATCCTCTTCTCTCCACTTATCCAGTGGATCTGCCTTTGTCTTAGTTCTTTTGCTTTTGTGGACTGGTACATCGTTCTTCACCTATTGATTTCTTTAGGAATTGTAGAACTTTGTTAAAATCTGTTCAGTGCACTTAACAGCTATTCTACCTTTATTCTCTTATGCCCCCCACCATATGTAGCTTCTAGTCCCTTGGCACAGGAATCAATATGCATCTTAAGTTTTACTTTTTTTCAG
Seq C2 exon
GCCGGGAGTCAAGACTTGAAACCAGACAACTCCAAAGTCCACCATTACTGAAAATTTGCCCTATGGGGTCATAATGGACAGGGAAGATCTCTGGCATTCAGCTTTAGGGGCTGTCTGGGATTCTACCTGTTGGTTAGAAGAGCAACAGGAAAGATATCTGGGCCAAGTGACAGTGACCCAAAAGGAAATATTTAATGAGAAGAGGGTGTGTGGAGGTAATAAAACTGAAAACGGTTCCATTGAGCATTCAATGCTTAGTATACCACAAAGCATTCCTGTGACAATAAGACTTTGTAACTGGAATTCATATGGAAAAGGTTCTAACCAAAATCCCAAGTTAATGAAATCTTCAAGAATGTTTGTAAGAAAGAAAATATATGAATGTGATGAGTGTGGGAAAAGCTTCAGTCAGAGTTCATCGCTGCTTAAGCACCAGAGGATTCACACTGGGGAGAAACCTTACAAATGTAATGTATGTGACAAGCATTTCATCGAACGCTCCTCCCTTACTGTACATCAAAGGACTCATACGGGAGAAAAACCCTACAAATGTAATGAGTGTGGGAAAGCCTTTAGTCAGAGTATGAACCTTACTGTTCATCAAAGAACTCATACTGGAGAGAAACCTTATCAATGCAAAGAGTGTGGGAAGGCCTTCCGTAAGAACTCATCCCTCATTCAGCATGAAAGGATTCATACTGGAGAGAAGCCCTACAAATGTAACGACTGTGGGAAAGCCTTTACACAAAGCATGAATCTTACAGTGCACCAGAGAACTCATACTGGAGAAAAGCCCTATGAATGTAACCAATGTGGAAAGGCCTTCAGTCAAAGCATGCATCTTATTGTCCATCAGAGAAGTCATACTGGAGAAAAACCCTATGAATGCAGTGAATGTGGAAAAGCCTTCAGTAAAAGCTCAACTCTCACGCTACATCAGCGAAATCACACTGGAGAAAAACCCTACAAATGTAACAAGTGTGGTAAATCCTTTAGTCAAAGTACGTACCTTATAGAACATCAGAGACTTCATTCTGGAGTGAAACCTTTTGAATGTAACCAGTGTGGAAAAGCTTTCAGTAAGAATTCTTCCCTTACTCAGCATCGCAGAATCCACACTGGTGAGAAACCTTATCAGTGTATGGTCTGTGGAAAGCATTTCACTGGAAGATCATCCCTCACTGTACACCAAGTTATACACACTGGAGAAAAGCCCTATGAGTGCACTGAATGTGGAAAGGCCTTTAGTCAAAGCGCCTATCTTATTGAACATCAAAGAATTCACACTGGTGAAAAACCCTATGAATGTGATCAGTGTGGTAAAGCTTTCATTAAGAATTCATCCCTTATAGTACACCAGAGGATACATACAGGAGAGAAACCTTATAAGTGTAATGAATGTGGAAAATCCTTCAGCAGGAGCACAAACCTTACAAGACATCAGAGGACTCATACATGAGAAAAGTTTTCACCAACCCCTTCATTTTGATTAATCTTTTGATACTAATCAGATGTCACATTGATGTAGATATGTAGTAAACATAACTATTGTGGTAAACTTTTAGTTGAAGCACAACACAGCATACCAGATAATAAAACCATAGAGAGGAACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750:ENSRNOT00000040346:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]