MmuINT0178716 @ mm9
Intron Retention
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50712214-50719659:-
Coord C1 exon
chr11:50719588-50719659
Coord A exon
chr11:50714794-50719587
Coord C2 exon
chr11:50712214-50714793
Length
4794 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATC
5' ss Score
5.91
3' ss Seq
GAATTTGTTTCCTTTTTCAGGCT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GCCTGGCTCGTTGTCTGTGAGCATCCTGTGCTCCCAAGAGGATCTCCTAGACTGGGTTTTAAAACTTTGTAG
Seq A exon
GTAATCTTTTTGTTTTTCTTTTTCTTAAAAGTTAAGCCTTCAGAATTTACATTTAAATTAGGCATCTAAATTTAATAAAGAATATATTGAACCTTACTAAGTTCTTTAATGGTGTTCTCAGTTTTAAAAATATATATATGGATTTATAAAGCATATGCTATTTGACACAATGCATATTCTATGACACCTTTAATGAATTAATGCTTTACTATTTTTTTTCTTATACAAACACTCTAAGATGAGTACCATTTAACAAATGAGGAGCCTGGCACACGCAAAAGTTAAGAAGCCTTCATAAAATCACACAGCTAATAGTGGTTGGAATCAAATTTGAGCAGGATAGATAATCTGGCCCAGAGTTATTACCTAACCACTATGCCCTCCTGCTTTTCTTTGTAGTTGGTGATGATGAAAATTAGTGAAGAATAAAGAAAGCAGATGCCCAGGGTCCAGAACCTAGACCAAGAACAAGCATCCCAGGCGAGCACTAACCTCTCCCCAGCACTGAGCACTATTCTGATTTGTGATAATTTCTATATTAGTCTCGGTTCTCTAGAGAAATGGAAGGGGATTTATTAGGGTAGTATACAGGCTCTGGTCCAACTAGCTAGTCCAACAATGGCTGTCTCTTAAAGAAAGGGCCAAAAATCCATGAGTCTGGGTGTGTCAGCTGCTCTTCAATCTGTATTGGAATCCCACAGAAGTAGGTTCTGATACCAGTAAAGGAATGCCCTGGGCGCAGGACAGATGAGCTGTTAGTGAGAGTGAGAGCAAGCAGGCAGAAGCTTCCTTCCTCCATGTCCTTTTGTGTGAACTGCCACCAAATGTGGCCCATATTTAGGGGGAGAGGGATCCTACTGCAGATGGCCCAAATTTGTCTTCCCACTTCAAATGATCCAATCAAATAAATCCCCCCACAGATATGCCCAACTATTGGGTTTTAGTTATTACAGATGTGGTAAAGTTGACAACCAGGATTAGCCATCACAAGTCTATTCCTTGTCAACTTGACAAACAATCGCATCGTGGCCAGTTACCAATTGAAAATGATAATGAGGTCATAATTCCACTTAACAAGATGTAACCACCCCAACTTTAACCATAAATGTATTATAGGTGGCAATATCCCCTGAAGAATGGTTGGTCTTTTAGTGTCTCATAACTTACCTATGATAACCATTAATATTATCTCAATTGATATTATATGATAAAAAAATAAAGAAACACAAATATCAACTAATATATATGTATATACGCACAAACTCATCCTTAACAAGATAGAAAAGAAACACTCGAATCAATTGTAATTTGTTTTTCTTTCATGTGGCCTAACTACCCATTCTGCACCTCAGCAGGTCTTGGTTCTTTTCCTGGAGGAGTGACTCATACCTTCATTCCTGAAGGTCTGGACCCTTTGTCCTCCTGCCTGGATTGGGTTGTTTTAGTTTCTCACTGACTTTAATCACAAACACTGGTAGCACCAAGACACACCCTGAAGGCTCTCCTGCACTCCAGACTTAGTCTTTCTTACCTCCATTGTAGAGAAGCAATTGAATTTCTTCCTGGTAATCTTGACCAGCCACCCCTCCTAACACTCTTCTTCCTTTCCTAGCCTGTTTGCTTAAGAGGATCAGAACCCAAAGTGGCCAGGGGATGAGTCTGAGCTTCCAGTTCAGTGGAGTTCTGTTGCGTCCTGGCAGGAGCGCAGCCCCATCTGGAACCAAAACTTCTGGGCCAGCAGAACTTAAGGTCATAGGAACTTAATGGTTCATAGGAACAGGATGCAAGCTTTTTTCAAACGGATCAGTAGGGTTGATAACGAGTGGAACTATTCCCATTCCTACCTCCACTTGATTCCTGGACCAGTGAATTCTGTGGAAGTACTACATATTGGGTGAAGATTAAAAGCATATACCTTCTTCTTCCAGCCGTCCAGGCTGCTTGCTGCTCCCTAATTGGCACTATAACTGTGTCTTCAAAAGGCCATCCCATCCTTCTCTCAGACCAGCTGCTTAAGGATCATGGATTCCATGAGCTTAGGCCCACTGTCACACTTCTCTGCCTATGAGTTCCTCGGTTAGAACCCATGCTATATTGAATAGCATAACAGTGAACAATGCGTTCTGTCAGTCTCCAAATGGCACTGCTGGCAGCATTCCATACAGGAAAGGCAAACCCATAACCAGAAAAAGAATCTATTCCAGTAAGGACAAAATGTTGCCGTTTCCATGATGAAAGTGGCCCCAGTGCAGTCCAGTTGACAGTCAAGGTCAGCTGTCACAATTCCCTTCTCCGGCTCTTCTTTACCATTTGTCTGTGCTAAAGATTTTCTCCTGCACTTTTTGTTGGCTTCTGGGTAGCAATTCACATTTCTCAAAGAACTTTAATGGGATAACTGGATGCTGCCAGAGTGAGCCGGAGCAAGAGACCACTGCGAGCTCATATTGCGTGCTAATACCACGAGATAGACATTCTCTGCAGAGTTCTTTAGGACATATATTTGGTGGTAATTCCTGCTTGACTTCTGATTTTTCTATTTATTAGAGCAGATCAACACGGAAAGGGAAAGCCCTGTTGTGTATATTTCTTGATTCTCAGCCTTTGGTTTACTGCTCCCCCATGTTAATCTCTGCTGTTAACGTTGATTGACAGCCCTACAGCTGGTACTCAGGCTCCAGGTTCCTGTCCTCATTCCTCACTGCCTCCTGGACTTGTTTTTGTCTGTGATACGAACTGGGGTCTTAGGAATCTGAGCAGCTTCAGGGTCCTTTCTTCTGCTCAGTTACCTGTAGCAAGCAGTTCAACAGCTTCTCTTCACCTTCCTCTGCTCAGCACGAATTCTCAACTTCATAGAGAGAAATTTAAGGAAAGAGTAGGATGTGTAGGCCTATTGCATTTATGAGTGGAACTGTCTGCTTAATGGTTAAGAGGAGAAGCCTGGAAGACAGCGTCATCCTCCATTAAGAGTTGGAGCTTCAAATATGTTCTGTTTTTGTGTTGTAGATGCAGGTATTTGCTAAGAGCACTTTACATATAGTGTCTTACTCACTATCGAGAATTTTATCCTCCTTTACATCTGTAAAAGTCCATATGGAAGTAAACAAGTAAATCATTAAGGTAGTGTTAAAATTCAGTTTAAACTTGTATGTGTGACTTGAAGGGCAACAATATTTTCATGCTTTGATATTTCATTAGATTGATTTAGTGTAGAGTTGTAAGAAATTACTAGTAGGAATGCCAGATGGATAGGCATCTTGGTTTCTTTAACCGACATGGGGCAGAAAGAAAGTATTTCAGCTTACAGTACCAGGTTACAGTCCATCATGGCAGAGAAAACTCGGTAGAAGAAGACAGAGACTGCTGGTCACATGAACACAGCACAGGGCTTGCCAGTACTCAGCTGGCTATTCCCCTTATAAAGGAGTCTCTGCCCAGGCAACAATCTCATCCACAGTCTATACGGGTCTTCTGACATCAATTAATGTAATCAATATAATCCCCCATGGGCATGTCCTTAGGTCACCCAACCTAACAATCCCTCGTTGAGGCTTCCTTCCCAGATAAATCTAGATTAAGTTAACAATGAAGATGCTCCCAATTTCACCCCTTGTCAATATGATACCAAAACTAATCTATTTTAAACCATAACCTACCCCTTGTCTCCACAGGCTCATTACCATGTTATAAAATGTATTTAATCCATCTCTTTTCTAAGACATAACCTAGATGCCCTTGTGTGCTCAATTTACCCTACCACTGTCCACATTAATTACTCCACTGTCTTGAAATACAGCTTATTCACGTTCTCAGGACATGGGCAGAATAAAGGCAGATATTTCAACAAAATATAGCACTAATGGCCCTTAGACCAGTCCCTGATAGACTCCCTGTTTTCCTGTGAAACCTTATGGTCCATCTTTATCTCAATCTTGTAAGCTCTCCCCAGCACGAGTTAAACTCCGAATCCTGCATTCAGTGTACCAGATTCTTCCACATTCTAGCCACAAATGTGTCCAAAGGTGTAAGAACAACACAGTCAAGTAACACACTAAAGGTCCCACTTCTAGTACCGATTCCTGTCTTAGTTACTTATCTGTTGCTGTGATGAAATACTCTGACAAAAGCAGCTTAGAAAGTGTTCACTTCACTCACAGCTCACAGTAAAGTCCATTCTTGATAGAGAAGACAAGAGTGGCAAGTGGCTGAGGGAGCTGGTCACATTACATCAGCAGTCAGAAGAAGAGAACAATGAATGCATGCTTGGTAGTGGTCAGCTCCCTGTCTATCCTCCTCTTATACAGGATCCCCTGCCCAAGAGCAGGCCCAGATGAGCATTCTCACATGTGTTAGTAGAATCACAACAACACTCCAAAGTCAACTCAGTCTAGGTAATCCTGCTAGATATGGCCTTGCCAGGCGATTCTGAATTCTGTCAAGTGGATTAAGTAATCATCAAATAGAGCACACCATCCTCACCCGCTTTCCCTTGCCAGTCTCTTCTGGGTATTGTCCCCGAGTTCTACAGTAACAATTGATCCGTCCCTCCTGGATGAGGTGTCCCCTTCTCTCCACTTCTGCAGTGGATCTGCCATTGTCTTGGTTCTTCCGCTTTTGTGGACTGCTACATTGTTCTTCACTTTTAGACTTCTCTAGGAATTGAAGATCTTTGGTCAAAATCTCTTCAGTGCAGGTAACAGTTATTCTACCTTTATTCTCTTAGGCCCTCCACCTCATGTGGCTTCTAGTCACTTAGCACAGGAATCAATATGCATCTGAATTTGTTTCCTTTTTCAG
Seq C2 exon
GCTGCGAGACAAAACTTGAAACAAGAGAGTCAACTCCAAAGTCCACCATTACTGGAATTTTGCCCTATGGGGTCATAATGGACAGGGAAGATCTCTGGCATTCAGCTTTGGGGGCTGTCTGGGATCCTACCTGTTGGTTAAAGGGGCAACAGGAGAGATACCTGGGCCAAGTGACAGTGGCCCAAAAGGAAATCTATAATGAGAAGAGTGTGTGTGGAGGTAATACAACTGAGAACTCTTCCACTGAGGGATCAATGCTTAATACACCACAAAGCATTCCTGTGACACCTTGTAATTGGAATTCATATAGAAAAGATTCTAAACAAAATTCTGAGTTAATGAAAACTTCAAGAATGTTTGTACAAAAGAAAGTATATGGCTGTGATGAGTGTGGGAAAACCTTCAGGCAGAGTTCATCCCTGCTTAAGCATCAGAGGATTCACACTGGGGAGAAACCCTACACATGCAACGTGTGTGACAAGCATTTCATCGAACGCTCCTCCCTCACTGTGCATCAGAGGACTCACACGGGAGAAAAACCCTACAAATGTCATGAGTGTGGGAAAGCCTTTAGTCAGAGTATGAACCTTACTGTTCATCAGAGAACTCACACTGGAGAGAAGCCTTATCAGTGCAAAGAGTGTGGGAAAGCATTCCGCAAGAATTCATCCCTTATTCAACACGAAAGGATTCATACTGGAGAGAAGCCCTACAAATGTCATGATTGTGGGAAAGCTTTTACACAAAGCATGAATCTTACAGTGCACCAGAGAACCCATACTGGTGAAAAACCCTATGAATGTAACCAATGTGGCAAAGCCTTCAGCCAAAGCATGCACCTTATTGTTCATCAGAGAAGTCACACTGGAGAGAAACCCTATGAATGCAGTGAATGTGGGAAAGCCTTTAGTAAAAGCTCAACTCTCACTCTACATCAGAGAAATCACACTGGAGAAAAGCCCTACAAATGTAACAAGTGTGGTAAGTCCTTTAGTCAAAGTACATACCTTATAGAACATCAGAGACTTCACTCCGGAGTGAAACCTTTTGAATGCAATCAGTGTGGAAAAGCTTTCAGTAAGAATTCTTCCCTTACTCAGCATCGCAGAATTCACACCGGTGAGAAACCTTATGAGTGTATGATCTGTGGAAAGCATTTCACTGGAAGATCATCCCTAACTGTACACCAAGTTATACACACTGGAGAGAAGCCCTATGAGTGCACTGAATGTGGAAAGGCATTCAGCCAAAGCGCCTATCTCATTGAACATCAAAGGATTCATACTGGTGAAAAACCCTATGAATGTGATCAGTGTGGGAAAGCTTTCATAAAGAACTCATCCCTTATAGTGCACCAGAGGATACATACAGGAGAGAAACCCTATCAGTGCAATGAATGTGGAAAGTCCTTCAGTAGGAGTACAAACCTTACAAGACATCAGAGGACTCATACATGAGAAATGCTCTGGTCAACTCCTTCATTTTGTTTAACCTTTTGATACTAATCAGATGTCACACTGATGTAGATACTTAGTAAATATAACTAATGTGGTAACTTTTTAGTTGAAGAACAATATAGCATAGCAGATAATAAAATCATAGAGAGTAACCATGTGAAAGTGGAGAACCCTTGATTCAGATTTGAGTAGCTATGACATAAATAATGAAGCTGTATTTGGTCACACTGGGAAATCTGATTTGGGCATCACAAAATTCACATTGAATGGACAATGTGATAGTGATTAACTGGACAGCCAAAAAATCTGATTCACCCAGTTCTAACCGCCCATGAGCCCTTTATCTAGTAATGAGAGATTTGGAATATACAAAGTCTGTAGGATCTATATTATCCAAAATGCCCAACACGAAGATTCAGTGAATTTTTTTTTGCTGTTGTATTTGCTATGGAGATGCTTTTATTTCATAGTATTTTTGGGGTGTTTTAGGTTAAAGTTTTCTACCTCTGACTCTTACTGTCCTTCAAATCCCTGAATTACTAACTCTTAAAATGTAAGCTAGTTGCTACTGGGTGGCAGATAAATTGTGCATATTTTAATGCCATAGCATGCTGTTTTGAGTTCTCAGCTAATAGTCATTAAACTGTTGTTAAATAAATTTACTCTATTTAGATGACAATGTGACTTAAATATAATCTCTAATTATCTAGGAATCAAATACATATCTTTGTGTCTTATTGGAGAGTCATAGAAATTTAAATACAGATGAATTGAACACTAATTGTGCTGGACAGTATTATGTCAACTTGATTGTCAACTAAAGTCATCTAAGAAGAGGGAATCTCAATTAAGAAAATGCCTTTATAAGATTGGGCCATAGGCATACCTACAGGGCATTTTCCTAATTAGTGATTGATAGGGGAGGATCCAGCCATTTGTGGGTGGTGCCATCCCTTGGCTGATGGTCCTGAGTTCTATACAGAAAGCAGGCTGAGCAAGCAGCACTCCTCATGGCATCAGCTCCTGCCTCTAGGTTCCTGCCTTGTTTAGTTCCTGTCCTGACTTTCTTTGGTGATGAAAAGTGATATAGACATGTAAGCCAAATAAACCTTTTCCTCCACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321-Zfp2:NM_001044697:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: