BtaINT0164379 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2371313-2374736:-
Coord C1 exon
chr7:2374647-2374736
Coord A exon
chr7:2373286-2374646
Coord C2 exon
chr7:2371313-2373285
Length
1361 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGAATTTTTATTTTTTTCAGACT
3' ss Score
8.18
Exon sequences
Seq C1 exon
GACATCAGCTTTCCAAACCTAATGTGATTTCTCAGCTGGGTTGAGAACTGAACCTGATGACAAAAGAACATCCTGGGTGCATCTCCCCAG
Seq A exon
GTAAGGATCAGGCTGCAAATACCTGTTTTATGAGTGTCACCTTGGGGAGAAACCACTTCAGAGGTCCCTGAGTCTCTTGAGACCTGTACCATTTGCTGTGTGTTTGTATTTGTCTAACAGTGTGAATATATACCCTATGTCCTCTGTGTTGTTACTGGGTAGCACTTGTTGGTACTTCACACTTGACTGGATAGGCCTTCTTTGAGGTTACTTGGTGGTGTGTGTGTTTTACAGGTGGACCCTGCTTGGCTTTCCACTTTTTCTCTTCTTCTGTGTAACTGGGTCAGATTAGAAGGATAAAGTCCAGTTCATGCATATCTTTTGCTTTCACAGTAGAGCTTCCTGCCCATAGGCCTTTGATCTCTTGGTTCACTGTTATTTCTGCTCTGGTAATTTTGATCAACCTGACAAGTGGATTCTCAGACTGTAGTTTCCTGTCCTCTGCCTCTCATTGCTTCCAGGCCACTTTATCTGGGATAAGAAATGGGATCAGTGAAAACAAAGTCTTGAGTGGTTACAAGGCCTTTCCTCCTGCCCCATTTCAAGCAGTTCAACAGATTCTCCCCTACCTGCCTCTACCACTAGTTCTTATTTTCAAGGAATGGGTATTTAGAAAAGGGTAGGGCCCTTTAGGATTCTCTTCCCTAAACAGAGTGAGAAAATCACAGGCTCCTTGGGCAGAAGGGAGGAGCTCTTTGAGATTGTGCCATCCTCCCTTGAGAGTTTAAGTTTCAAGTGTGTTCTGATACTTTATCTTCCAGACAAATATGTACCCTAAGGGTAGTTTATATACATTAATTTACTTAGTCCTTATGAGATTATTTGCATCCTCATTTTATATCTGTGAAACTCAGATTCAGAGAAACAAGTAAGTACTTAAGATGCTAAGTGTTAACAGCTAGTGTTTAAACCCAAGTTTGTCTGCCTCCAGTGTAAACAATCTTTTCACTATGTCACACTACTATGTTTTATGAGGATTTAATATCAGAATTATAGGCAGCCTGCAGAAGAGAAGAAACTGCTGGTAAATCTGCTATGGCTTCCTAATCCCAACTTCTCTGTATATCTTCTCTTAGTTCCATCTTCCTTTTTTAGCCTTGTCCAACAGTTGGTGATTTCAGTATCTGTCCCTCCTGCATATAGGCTCACTCTTTCCTCTGCTTACCTGCTTCTAGTTCCTCTGTTATTTACCGGTGGCTCACTGTTCTTTCCCTACCTTCCAATTCTCTTCCTAATTATAGGGACATCCTTGGAAGCTCTCAAATGTGCCATATAGTTATTCTCAGTTGCATTCTCTTATTCCCATCTTATACAGGTTTCAATCTAGTATAGAAACAATTTTGAATTTTTATTTTTTTCAG
Seq C2 exon
ACTGGAAGACCAAGACTTGAAACAAAAGAGTCAACAACGAAGCCCAAGTTCTTGAAGATTTATCTTATGGGGTAATAATGGAAAGGGAAGGTCTCTGGCATTCTTCTTTAGGGGAAACCTGGGAACCTGATAATTGGTTAGAGGGGCAACAGGAAAACCAGGATAGACATTTGGGCCAAGTGCACATTACCCATAAGGAAACCCTCACTGAGCGAAGGACATGTGGAGGTAATGAACTTGAAAGATGCTCCAGTCAGGGTTCAATCATTGATATACAACAAACTATTCCTGTGGGGAAAAGTCCTCACAACTGGAATTCACATGGAAAAGACACTAAACAAAATGCCGAATTAATTAAAACTCAAAGAATATTTGCCGGAGAGAAAGTCTATGAATGTAATGAGTGTGGGAAAACCTTCAGCCAGAGTTCGTCTCTTCTTAAGCACCAGAGAATTCATACGGGGGAGAAACCCTATAAGTGTAATGTATGTGAGAAGCACTTCATTGAACGTTCCTCACTTACTGTACATCAAAGAATTCATACTGGAGAGAAACCCTACAAATGTAATGAATGTGGGAAAACCTTCAGTCAGAGCATGAACCTTACTGTTCATCAAAGAACTCATACTGGAGAGAAACCATATCAATGTAAAGAGTGTGGAAAAGCTTTCCGCAAGAATTCATCCCTTATTCAACATGAAAGGATTCATACTGGAGAGAAACCCTACAAATGTAATGAATGTGGTAAAGCTTTTACCCAAAGTATGAATCTCACAGTGCATCAAAGAACTCACACAGGAGAAAAACCCTATGAATGTAATGAATGTGGAAAAGCCTTCAGTCAAAGTATGCATCTTACTGTACATCAGAGAAGTCATACTGGAGAAAAACCCTATGAGTGTAGTGAATGTGGAAAAGCCTTTAGTAAGAGCTCAGCTCTTACCCTGCATCAGCGAAATCATACTGGAGAAAAACCCTACAAATGTAACAAATGTGGGAAATCCTTTAGCCAAAGTACATACCTTATAGAGCATCAGAGACTTCATTCTGGAGTAAAACCTTTTGAATGTAATCAGTGTGGGAAAGCTTTCAGTAAGAATTCATCTCTTACTCAACATCGGAGAATTCATACTGGAGAGAAACCTTATGAGTGTATGGTATGTGGAAAACATTTCACTGGGCGATCATCCCTTACTGTACATCAGGTTATTCATACTGGAGAGAAACCTTATGAATGCAGTGAATGTGGAAAGGCCTTCAGCCAGAGTGCATACCTTATTGAGCATCAAAGAATTCATACTGGTGAGAAGCCCTATGAATGCGATCAGTGTGGAAAAGCCTTCATTAAGAATTCATCCCTTATAGTGCACCAGAGAACTCATACAGGAGAGAAACCCTATCAGTGTAATGAATGTGGAAAAGCCTTCAGTCGGAGTACAAATCTTACACGGCATCAGAGAACTCATACGTGAGGAAAACATGGGACCCTTCATCATGATTAACTCTTCAGTGGTAATCAGATAAATCATGTAATATAGAAACCTAATAAATGTAATGATCCCAGTAATTTTTTAGTTGTATAATATACCATGTCAGAAAATACAGACCACTGCAGAGAAACCACATAAAAGTGGAGAGAAATCTTGATTCAGAAAGTAAAACTTACTTTATACCAGAACGTTTAAATAACTAATGTTCTAAGCAGTGAGGATTCATGCTGAAGATAAGTTCTATTGTATTATACTGCAGATTCTCCTTTGGACATCAGAGACTTCACACTGGAGAGAAAATGTGAGAGTGCTTAACTGGACAGCCCAAAGACCTGGTATGTAGTCCTGATCTGCTACTAACTTGGACAAGTCACTTACTTTCACCAGGTCCCAGTGTCCTTATTTGGTAAATGAGGGATTTTTAGATTTAGAAGGCTCCAAGATCGCTACAATCTACAATCCCATAAATATAATGAATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122:ENSBTAT00000009371:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF097235=Zn-ribbon_8=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGAACATCCTGGGTGCA
R:
CCAGTTGTGAGGACTTTTCCCC
Band lengths:
345-1706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]