MmuINT0178719 @ mm9
Intron Retention
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50719592-50724027:-
Coord C1 exon
chr11:50723938-50724027
Coord A exon
chr11:50719660-50723937
Coord C2 exon
chr11:50719592-50719659
Length
4278 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
CTCTCTCCTCACCTTTGCAGGCC
3' ss Score
11.19
Exon sequences
Seq C1 exon
GGCATCAGCCGTCCAAACCAAATGTGATCTCGGAGCTGGGACAAGAACTGACCCTGAAAAAAGGAGAATTCCCAGGTTGCATCTCTCTGG
Seq A exon
GTAGGTGTCAGAATGCAAGGACTGTCATGTGTGTGTCTTACTAGGAAGTGTGAACAGGATTGTAGGGCTCTAGAAAGACCAGCTCCTACAGATGTGTATTTTATGAAGACAGTGCCGCTGTGCCAATGAGAGTTGTCCTCTGTCACTCAAGCTTATGTCCTGGTCTTGCACGAGGGGATGGGCGCATTGTGAAGCTTGAGTAACTACACGTGTAGCAGTTGTCCAGTGCCTGGAGCCACTGAGCATTGGAAACGTTAGCAATGGCTGTTTCCTCTCTGTCTCCATCTGTGTTCAGTTAAATCTGTCCCTGACTGAAACACCTCCCTTTACTGTCTTTGTTCCTAGGCCTAACCTCTATTCCTAGCTTTCCTCCCCTTGTATATGTAAACATTTGAGAGCTTTCTTTTCTTCCTTCCTTGATAGGAATTTTGAATAGGCTTCATATTTTAAAAAGTGAGAAGTGACTGTTAGTTTTGTTTGCCATTCTAACAGCTTTACATCTTACACATCCTATTTTCTTCTCTAAAAGTCTCATCTGTGTCCACCATCAATTTATTCCCTGCCCAGTAGCTCTTCATGCTTGTGCCTTGGTCAGTCTCCCTCACAGCTGAGAGTTCTCTGTGAGGTGATATCATTAGCTTTTCTCTGCAGAAAACACATCTTATACCTTGCCTTTCCCACATTTCTAGCTCCATTCTTATAAAATATATTTTTTAAAGCTAGAGAGTGAGCATGGGACTTAGACATGTCTCTGTTGGTAACATGCTTGCTGGGTAAGCAGGAAAACCCGAGTTCTACTCCCAGTGTTCACGTAGAAGCCATGCCTGTAGAGTATAGGCCTCACACAACCGTAACTCAGCGGTGAGGAGGCAGAGCCAGGAAGAATCCTGGGGCTCTCTGACCAGCTACTGTAGACAAGTGGGTGAGCACCAGGTTCAGTCAGAGACCCAGTCTCAGACAATAAGATGGAGAGTGATGGAGACACCCGACATCAGCCCTGCCTCAAAAACAAAAGGATGAAGTACTACATTAATTGCGATTGTCTTGCCATTATCCCTACCATGTGACTTGTTGGAAAATGTCCTCAGGAGAAGATGCTGGGGTGCTCAGGGGTGTCGTGTTAAATCAGTGAGCTCTGAAGTGGCCCAGCAAAGCCGGTTCTTGTGCACGACACACAAGTGTCTGCAGCCAGAGAATCTGGGTGAGCGACAGATGTGTTCATTGTTCTCTCATTTCTGTGCATTCAGACTTACAAGATTATCAATGCACCAAGGAAGCTGGGGAGAGACTGGCCATTGTCTCACTGTCACTTAGGTGCTGGCCTCTCCCTGGGGGCCTCCGCAGATGCTTAGAGGCATCTGTTTGTGCAGTTTGTCAAGGAAACAGGAAAACAGACACTCTGAGTATAGGTATAGCAGCTACCCTGAATGTATTTTCTGAAGAAAAGGGAGCTGTTACAACTTTTATAGGCATAGACAAAAGGAAATGATAAACAAACATGTTCAGTGTATACCTTGGTGGGGGACCATCTGTAAATGAGTTTAGGCAAAGAGGAAAATTCCTGGCTACTGGGCTGTGTCGGGGTTATTCTGTATTCTTATCTTTATATCACCATGCAGAAGTTGCCCATCTGGTATTTGCATGAAGAAATTCACAAAAAATTCTTTATGAATGCATAATTTTACAACATGAATAAAATGTCCTGACCACCACTGCTGGCTTTTAGTGAGTTTCCTTGAGAACAAGACTCTAAAGGATGACTCACTGGGTTGAAGGGTATATGCATTTAGAGGTCTTGCTGCTTGCTGTACAACTTGTAATCCCGTTTTATGCTTGTAATGCTCACTTATCTGATATAATGTGATCCCTTTCGGGAGCTTAATTGCTTTCGCTATGGATTTCTGTGGCGTTGATTACTCTTGCTACTTACATTTATTGTTTGTAAATAGTTTATTCATTCCACAAATGGTCATTAAACATTAGGCAGTCTTTCTGGCACTGGGATTATAGCAAGAAAACAACGCAGGCAGAATTTCCATGAGCTCATGTTCTATTTAAGAAGATCATACAGAGAAGGGTGAGACGTGGCAGAAGGGAGAGAGAAGAAAGCAGTTAAGGAGGCGGGAGCAGCACCATCAGTGAGTGGGTGGGAAGAGAAAGCAGCCTAGAGTCAGGTTAGATCTGCTTTGAACAGACTTTGAACAGAGATGCTCAAATAAAGCCATAGGTCTGTAGCCAGGCTGTTTTCTACCAGCACCCTAGTTCCCATGTAATGACGCAGACTTAATTATTTACTAATAAGAGCCTAGGCCATAAGCTTGGTCCTGACTAGCTCACAACTTTCACAATCTGTTCATTGTATTGTTTTCTATGTGTGCCATGTGGCTGGTTACTGCTCCTTGGTTTCATATGTCCATCTCCTCCGAGTCCAAGTGACGAATGTCCCATGCCTGACTGACTCCCCAGAGCTCCTGTCTTTCTACTAGAACTCCCCCCTCCTATTTCCTGACTTGCTCATTGGCCATCAGCTTTTTATTGACAGTTGATGCTTCCAAAGAGTTCACAGAGATTCTCTCTACCTAGGTCTAGGAGAGTATTCTGGCGTGGGGAACAGCAAGCACCAAGGCTCTGACATAGGGGATTGCTCTTCTAAAGGGGAGAGAGCCTTGAGCCTTGAGCAAAAAGAATCCTCAAAATATAGTTCTTTAACTCCAGAGGAAAAAACACATATTTTCTGCTTAGAGATTTTCTATTTCTGCATTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTATATTGACTTGGGTTGATGTATGCACATGTGTATGGTATATGCACTTGTGTATGGTGTGTATGTGTGTGTGTGACATATGCATTTGTGTGTGGTGTATACACACATGTGTGTGCTGGTATGCTCACTGGAGGCCAGAAGACATCCAGTGTCCTGCTTTACCAGTCTGCCTTGTTCCCTTTAGATAGGGTCTCTGAACCTAGAGCCAGGCTGGCAGCCAGCAAGCCACAGCAGTTCTCTGTACTGGGACTGTAGGCATAAACGTCCATGCTCAGCTTTCTATCTGGGTGCTGGGATTGGACCTCAGTCCTCACACTTGCAGAGCCATCTCCAGGGCTCCTGTTCCCTTTGTCAGCAGTACATGGACTTCTCTTGCTTTAGAAATGTTAGCGTTTCAGTAGTTTTGGAGTTTGTTGGTATAGACATGTAGTGATGTATTTCTGTACTCTCCAGATTTAGCACATTTGTTTAGGGTTCTTTTTTGCTCATCCCACTGTCATGTGCTGAGGTTTCTAGAGGCATGGATGGAAGTGTTTGCTGGCAGTTCTAGAGATCACTCCTCGCCTCTCACATCCGAGCACAGGCTTTCCCACTCCGCTGCATCCTGAGCCCCATGCTTTGGATGACGATTTCCTACCCCACCCCTTTACCTTCTTTCAGACTTTTCCATCGGGAAGGATCCAAAAGCTGCTTCAGCTGTTTATGATTTGGAGTGCACACTGTTATTTCCCTGTCTTCTGGGACGTCTGTCTGTCTGCAGGCATGCGGTTTCATTATATGCCTACTCGCTGCCTGCGAGAGTCAATATTTAATAATATTTGTTGAGTGAATATTGGATGACATTAAGTAGAACTTCTAGAAGTCGGGTGCCAGTAGGTTTGAGAACTGTAACCATATCTGTGAAATTGATACCAACACAAACTGGAAAATGATCAGGATAGAACCAAAGGCCAGAGCGCTCCCACACAGATTACAGAAGCCTGCCCAGGGATGAGGAAGGAGCTGGGTCATGGAACAAGGAAAATCAGAAAGAATACAGCAGTGTCAAGTAAGAAAAGATAAAGTGTCTGTGGGCCAAGTAACTGGGAAGCCACATGTGACCCAGGGAAGAGCGTGTTCCGTGCTAAGGGGCTGTGCTGGGGAGAGTACAGAAGCAAGCGCAGCCTGACATTTCATCAAGGCTAGACAGAAGGGAAGAAGGAAGAGAAGAGGCCCTCTACTTACTGTGTTCTTTGGGGAATGGATCTGAATTGCCCTCTAGAGAAGGAGAAACTGAGGAGCTAGAAAAGAAAACAGGGTGAAGGCCAGGGAGGACAGTGAGTGAGGTGCAGAGCAGATCACTGTCAGGTCACCTGTTCAGTGGTGTCATGTTGGTGGGGAAATGTCTGACTGCAGAGGTGTGTCTTGGTTTCTGTGCATTCGCAGTAATGGCTGAGTTCATGGCTCAAGTCACATGTCTCTCTCCTCACCTTTGCAG
Seq C2 exon
GCCTGGCTCGTTGTCTGTGAGCATCCTGTGCTCCCAAGAGGATCTCCTAGACTGGGTTTTAAAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321-Zfp2:NM_001044700:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: