HsaINT0185507 @ hg19
Intron Retention
Gene
ENSG00000198939 | ZFP2
Description
zinc finger protein 2 homolog (mouse) [Source:HGNC Symbol;Acc:26138]
Coordinates
chr5:178339983-178343711:+
Coord C1 exon
chr5:178339983-178340072
Coord A exon
chr5:178340073-178343565
Coord C2 exon
chr5:178343566-178343711
Length
3493 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCAGATCTTGTTCTTTCCAGATT
3' ss Score
7.25
Exon sequences
Seq C1 exon
GAAATCACCTTTCCAAACCCAATGGGACTTCCCAGCTGGAACGAGAACTGAGTCTGATGCAAAAAGAACCGCCTGAGGGTGGCTTTCGAG
Seq A exon
GTAAGTGCCAGGCTGTGCAGACTTGTTAAATGAGTGTGTCTTTGGGGAAAATCACTTCAGAGATTGTTGGGTCTCTGGAGAGACTAGGGCCACTGGATGTGTGTTCTCAGATGACACCTCCGCATTACTGATGGGCCTCTTTTCTCTAGGGCTCACTTATGTCATCTTGCAGGGAGGTGGTGGATTATGAGGAGTAAATGAGTTTTTACATTTATGGCACTTACCCACTGCGTGGAACATACTGAGCATTTGGTAAATGTTAGCAACCACTATGTCCTCTTCTGTCTTCCTCTGCATTCTGAATTGAAACCCTGTCTTTACGCATCTTCTCTGGGCTTTTACTGTCTTTCATGAGTGTTTCCTCTCAACCATAACGTATATCCATAGCTTCCTTTCTGTCATTCATGTAAATATTTGTAAGCTTTTTCTCCTTCAAAGGAAACTAACATTTCTCTTCCTCTGCATTGTGTGAGAGAGTTTTAGACAGTCTTCATTTAAAAACATGAAAAATGATGTTAGCCTTGTTTTCATTTCTAGCAGCCTTACATTGTGTATATTTTCTTTCTCATTCCCAAAATTCTAATCTGCATTACTACCCATTCAATGCCATTTACCTCAAAATGTTGAATGCTCCTTTATCTTTGTTATCTGGTTTCTAATCCTTATCACAACTGAAATTTCTGTTTTAGGTGTTATTACTGACTTTTCTCTGCAAAAAAAAAAAATGCATTTTACATCTTTATCTTCTCTACCATGTGCAAAAGTACCAATCATTTCTTTTTTTTTCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTTGTACTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCGTGCCTGGCCCTAATCATTTCTTTGTATATTTTTTTTAAATTAAAGAGATAGGCAAATATTTAATCTCTAGATAATATAAAGCTATCTAAGATAAAACAATGAAAGAAATCATTAAAGGAACACAATTATAGGAAAAACATTGCCTGTAACCATCACTGCTGGTTTCCCACAAGTTTTTTTAAAGAATGGGATTCTGGGAGAGGAATCACTGGGTCAAAGGATATATCCATTTTTTATGGTCTTGCTACATATTGCACTGCTTTAGATACTATTTTGTGTTTAATGATAATTTCTTTGGTATAAAATGAAAGGTAGTGTTAATTACTTTTATTACAGATTTCTATGGATTTTATTACTATTGATATTTGTATTCTTATGTAAATAACCTATTTATTCAACAAATATCTATTGAGTACTATTCTTAGCACTGGGACTACAGCAATAAGCACAGCAGGCAAAGTGTTTTTGAGGAGCTTATATTCTAATGGGGAGACAATAAAGGAAGAAGGGAGGGGGGGACAGAAGGGAAAGGAAAGGAGGCAGGAAGGGAGGAAATGAATATAACACAGTGATAGGTGCGGTGTGGAAAAATAAAGCAGCATAAGAGAATGACATTAGTTAACAGGAGTGTGATTTTACAGGGAGGGCTTCTCCTTTAATGAGACTTTTGAGCAAATACTCAAAGTGATGGGCCACATGGGAGAACATTGAGGACATAGGGAACAGCAGGTGCGAAGGCCCTGAGGTAGGAGATTGTGTGGCATTGTTTGAAGGGGAGTGTGCTAGCAGATACGAAGATTTCTGTAAACCTTACGTTTCAGTCCTTCTGTAAAAAGATCTATTTGTACTATCATTTTTTAAATTTCTGTGAGCCACTCATTGTCTGAATGTTCTTCTTAAATAGCAGTCTTTCTAACGCATACACTAACTTCACTCATCTGTTTGGGAGTATTTCATTGTTTTTGTTTCTGGTTTTCTGGTATGTATGTGCAGCAGTTTTTTCCTTGCTCCCTAGATTATTTTATTGATGCCATTTTCATTGCTTATTGTCATTCTGGTGGGTTTTCTGGAAGCAGCAGAAGCAAACACATATATTTTGATACTGTGTTTTCATCTCCCACTTCTTTACCCCATTCGTGCTTCCCTACTGGGTTAGAACCTAAAGGTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAACCTCCGCCTTCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACTGCCGTGCCCGGCTAATTTTTTGCATTTTAGTAGAGACAGGGTTTCACTGTGTTGTCCAGGCTGGTCTCAAACTCCTGAGCTCAGGCAGTCTGCCCACCTCAGCCTCCCAAAGTGCTAGGATTATAGGCGTGAGCCATGGCACCCAGCTCACTTGTTTTTTTTTTTACTGCATGTGACACTGTATTTTGCTCATCATTTTCCATGTCTGTCTGTCTTTAGCCGGGCATGGTTGCGTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGTGCAAGAATCACTTCAACCCGGGAGGCTGAGGTTGCGGTAAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAGCGGAGCAATACCCACTAATATGTAGGCTCACCGAATTGTCATTGAACATGTTTTTCTTTACATTCCCTGACTATGACATTGCTTGCTGGAGTAAGTACTTAAATATTTGTTGAGTGAATATTTAATGACATCAATTAGAATTTTCATAAATCTGGTGAAAATATAAATTTGAATTTATGAAATTCATATCAATACAGATTGGATAATTATTGGGATGAATGAATGAGTGGGCAGGGCAAAACAGCAAAGGTGGGACCCTCAGGACAATAACATAGTGAGGGGGCCAAGGATGCTCTGGTGAAGGTGAGTGGTCCAAGGAGGAGGAGAGGGCCCAGCAGGAGAACATGGTCGAAGGGAGAGAGGAGAGTCAAGGTAGAGTATGACAGTGCCAAGTAGGGAATGAAAATGCCTGTTGGATTTGGTGATGAGGGAGTGGCCTGGGACCCAGGGAAGAGCCCATTTAGTGCTGAGAGAAATACGCTGTGGGCAGAAAAGTGAAGAGGAAGCAAGCAAGTGAAGACTTTTAAGTACAGACTGTCGTTTCAACAAGGCCAGCTTCTAAGGAAAAGGAAGAAAGAGTAAGAACTCAGAAGAAGCCTGTGGTTTGTTTTTTAACAAGGAAAAGACTTGAGTGTATCTGAAAGAGCAGAGAGGTGTCCATTGCAGTGGGAGAAACTAAAGATAGGCGAAAGTTGAATGGAAAGGAGCCCATAGAACATGATGATTTGCAAACTCCAGATCTTGTTCTTTCCAG
Seq C2 exon
ATTTTCTTGGATATTGCTGTCAGATTAATCTGACATTTAGTCCTCTCATTATCCTGTCCCAGTCAAGGGGAGAAAGTATTGACTGAGTGCTGTGCTCAGCTCTTCCACAGCCAGCATCTCACTTACTTGACACAAAACATCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939-ZFP2:NM_030613:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)