HsaINT0185507 @ hg38
Intron Retention
Gene
ENSG00000198939 | ZFP2
Description
ZFP2 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:26138]
Coordinates
chr5:178912982-178916710:+
Coord C1 exon
chr5:178912982-178913071
Coord A exon
chr5:178913072-178916564
Coord C2 exon
chr5:178916565-178916710
Length
3493 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCAGATCTTGTTCTTTCCAGATT
3' ss Score
7.25
Exon sequences
Seq C1 exon
GAAATCACCTTTCCAAACCCAATGGGACTTCCCAGCTGGAACGAGAACTGAGTCTGATGCAAAAAGAACCGCCTGAGGGTGGCTTTCGAG
Seq A exon
GTAAGTGCCAGGCTGTGCAGACTTGTTAAATGAGTGTGTCTTTGGGGAAAATCACTTCAGAGATTGTTGGGTCTCTGGAGAGACTAGGGCCACTGGATGTGTGTTCTCAGATGACACCTCCGCATTACTGATGGGCCTCTTTTCTCTAGGGCTCACTTATGTCATCTTGCAGGGAGGTGGTGGATTATGAGGAGTAAATGAGTTTTTACATTTATGGCACTTACCCACTGCGTGGAACATACTGAGCATTTGGTAAATGTTAGCAACCACTATGTCCTCTTCTGTCTTCCTCTGCATTCTGAATTGAAACCCTGTCTTTACGCATCTTCTCTGGGCTTTTACTGTCTTTCATGAGTGTTTCCTCTCAACCATAACGTATATCCATAGCTTCCTTTCTGTCATTCATGTAAATATTTGTAAGCTTTTTCTCCTTCAAAGGAAACTAACATTTCTCTTCCTCTGCATTGTGTGAGAGAGTTTTAGACAGTCTTCATTTAAAAACATGAAAAATGATGTTAGCCTTGTTTTCATTTCTAGCAGCCTTACATTGTGTATATTTTCTTTCTCATTCCCAAAATTCTAATCTGCATTACTACCCATTCAATGCCATTTACCTCAAAATGTTGAATGCTCCTTTATCTTTGTTATCTGGTTTCTAATCCTTATCACAACTGAAATTTCTGTTTTAGGTGTTATTACTGACTTTTCTCTGCAAAAAAAAAAAATGCATTTTACATCTTTATCTTCTCTACCATGTGCAAAAGTACCAATCATTTCTTTTTTTTTCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTTGTACTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCGTGCCTGGCCCTAATCATTTCTTTGTATATTTTTTTTAAATTAAAGAGATAGGCAAATATTTAATCTCTAGATAATATAAAGCTATCTAAGATAAAACAATGAAAGAAATCATTAAAGGAACACAATTATAGGAAAAACATTGCCTGTAACCATCACTGCTGGTTTCCCACAAGTTTTTTTAAAGAATGGGATTCTGGGAGAGGAATCACTGGGTCAAAGGATATATCCATTTTTTATGGTCTTGCTACATATTGCACTGCTTTAGATACTATTTTGTGTTTAATGATAATTTCTTTGGTATAAAATGAAAGGTAGTGTTAATTACTTTTATTACAGATTTCTATGGATTTTATTACTATTGATATTTGTATTCTTATGTAAATAACCTATTTATTCAACAAATATCTATTGAGTACTATTCTTAGCACTGGGACTACAGCAATAAGCACAGCAGGCAAAGTGTTTTTGAGGAGCTTATATTCTAATGGGGAGACAATAAAGGAAGAAGGGAGGGGGGGACAGAAGGGAAAGGAAAGGAGGCAGGAAGGGAGGAAATGAATATAACACAGTGATAGGTGCGGTGTGGAAAAATAAAGCAGCATAAGAGAATGACATTAGTTAACAGGAGTGTGATTTTACAGGGAGGGCTTCTCCTTTAATGAGACTTTTGAGCAAATACTCAAAGTGATGGGCCACATGGGAGAACATTGAGGACATAGGGAACAGCAGGTGCGAAGGCCCTGAGGTAGGAGATTGTGTGGCATTGTTTGAAGGGGAGTGTGCTAGCAGATACGAAGATTTCTGTAAACCTTACGTTTCAGTCCTTCTGTAAAAAGATCTATTTGTACTATCATTTTTTAAATTTCTGTGAGCCACTCATTGTCTGAATGTTCTTCTTAAATAGCAGTCTTTCTAACGCATACACTAACTTCACTCATCTGTTTGGGAGTATTTCATTGTTTTTGTTTCTGGTTTTCTGGTATGTATGTGCAGCAGTTTTTTCCTTGCTCCCTAGATTATTTTATTGATGCCATTTTCATTGCTTATTGTCATTCTGGTGGGTTTTCTGGAAGCAGCAGAAGCAAACACATATATTTTGATACTGTGTTTTCATCTCCCACTTCTTTACCCCATTCGTGCTTCCCTACTGGGTTAGAACCTAAAGGTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAACCTCCGCCTTCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACTGCCGTGCCCGGCTAATTTTTTGCATTTTAGTAGAGACAGGGTTTCACTGTGTTGTCCAGGCTGGTCTCAAACTCCTGAGCTCAGGCAGTCTGCCCACCTCAGCCTCCCAAAGTGCTAGGATTATAGGCGTGAGCCATGGCACCCAGCTCACTTGTTTTTTTTTTTACTGCATGTGACACTGTATTTTGCTCATCATTTTCCATGTCTGTCTGTCTTTAGCCGGGCATGGTTGCGTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGTGCAAGAATCACTTCAACCCGGGAGGCTGAGGTTGCGGTAAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAGCGGAGCAATACCCACTAATATGTAGGCTCACCGAATTGTCATTGAACATGTTTTTCTTTACATTCCCTGACTATGACATTGCTTGCTGGAGTAAGTACTTAAATATTTGTTGAGTGAATATTTAATGACATCAATTAGAATTTTCATAAATCTGGTGAAAATATAAATTTGAATTTATGAAATTCATATCAATACAGATTGGATAATTATTGGGATGAATGAATGAGTGGGCAGGGCAAAACAGCAAAGGTGGGACCCTCAGGACAATAACATAGTGAGGGGGCCAAGGATGCTCTGGTGAAGGTGAGTGGTCCAAGGAGGAGGAGAGGGCCCAGCAGGAGAACATGGTCGAAGGGAGAGAGGAGAGTCAAGGTAGAGTATGACAGTGCCAAGTAGGGAATGAAAATGCCTGTTGGATTTGGTGATGAGGGAGTGGCCTGGGACCCAGGGAAGAGCCCATTTAGTGCTGAGAGAAATACGCTGTGGGCAGAAAAGTGAAGAGGAAGCAAGCAAGTGAAGACTTTTAAGTACAGACTGTCGTTTCAACAAGGCCAGCTTCTAAGGAAAAGGAAGAAAGAGTAAGAACTCAGAAGAAGCCTGTGGTTTGTTTTTTAACAAGGAAAAGACTTGAGTGTATCTGAAAGAGCAGAGAGGTGTCCATTGCAGTGGGAGAAACTAAAGATAGGCGAAAGTTGAATGGAAAGGAGCCCATAGAACATGATGATTTGCAAACTCCAGATCTTGTTCTTTCCAG
Seq C2 exon
ATTTTCTTGGATATTGCTGTCAGATTAATCTGACATTTAGTCCTCTCATTATCCTGTCCCAGTCAAGGGGAGAAAGTATTGACTGAGTGCTGTGCTCAGCTCTTCCACAGCCAGCATCTCACTTACTTGACACAAAACATCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939:ENST00000361362:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains