RnoINT0167840 @ rn6
Intron Retention
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36395480-36400123:-
Coord C1 exon
chr10:36400034-36400123
Coord A exon
chr10:36395548-36400033
Coord C2 exon
chr10:36395480-36395547
Length
4486 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTTTTTCCTCACCTTTGCAGGCC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GGCATCAACCATCCAAACCAAATGTGATCTCTGACCTGGAACAAGAACTGACTCTGAGAAAAGGAGAATTCCCAGGTTGCATCTCTCTGG
Seq A exon
GTAAGTGTCAGGATGCAAGGACTGGAAACATGTGTCTTATTAGGAAGCGTGAACGGGATTGTGGGGTCTCTGGAGAGGCCAGCTCCCACAGATGCGTATTGTAGGAAGACAGGAAGACAGTGCCACCATGCCAATGAGAGTTGTCCTCTGTCACTCAAGCTTAAGTCCCAGTCTTGGCAGAGGGGATGGACACATTGTGAGACTTGAGTACCTACACATATAGCATTTGTACATTGTCTGGAGCCATTGAGCATTTGGAAGTGTTAGCAATGGCTGTTTCCTCTCTGTCTTCATCTGTGTTCAGTTAAATCTGTCCCTGCCTGAAACACATCCTTTGACTGTTTTTGTTCCCAGGCTTAACCTATATTCCTAGCTTCCTTCCCCTTGTATTTGTAAACATTTGAGAGCTTTCTCTTCTTCCTGCCTTGATAAGGGTTTTGAATAGGCTGCATATTTTAAAAAGTGAGAAATGACTGTGGTTTTGTTTGCAGTTCCAACAGCTTTACATTTTATGCGTCCCATTTATAGCTCTAAAAGTCCCATCTGTGTCCACCATCGATTTATTCCCTGCCGTTCAGCTCTTCACAATTGTACCTTGGTCAGCCTCCATCACAGCCGAGAGTTCTCTATGAGGCAATATCCTTGGCTTTTCTCCACAGACAACACGTTGTACATCTTGCCTTCCCCACATTTCTAGCCCCGTTGTTTTAAAATGTATTTTTTATGGCTAAAGAGTGAGCCAGGGACCTAGAGGTGGCTCTGTTGGTAACGTGCTTGCCGTGTAAGCTTGAACACCGGAGTTCTACTCCCAGTGTTCACGGAGAAGCCATGCCTGTAGAGTACGGGCCTCACGTACCTGAAGCTCGGCAGTGAGGAGGCAGAGACAGGAAGGTCGCTAGGGCTCTCTGGCCAGCTACTGTGGACAAATTGGTGATCTTCAGTTCAGTCAGACATCCAGTCTCAGACAATAAGGTGGAGAGTGATGGAGGCACTTGACATCAGTCCTGTCTCAAAAACAAAAGGATACAGTACTACATTGATTGTCATGCCATTATCAGTACCATGTGACCTGTCAGAAAATGTCCACGAGAGAAGATGCTGGGGTGTGCAGGGGTAGCATGTTAAATCAGTGAGCTAAGAAGGTCCAGCAAAGCCAGTACTTATGCCCAACACACAGAAACAGTAAATGAGGCCCAAGTATCTGCAGCCAGAGATTCTGGGTGAGGGTCAGATGTGTTCATTCTTCTCTCATTTCTGTGGATTCAGACTCACAAAATTATAAACGCGCCAAGGAGGCTGAGGAGAGACTGGCTGTTGTCTGACTCCCACTTCTGTGCTGGCCTCTCCCTGGGGACCCCTGCAGACTTAGAGGCCTCTGTTTATTCAGTTTGTCCAGGAAATAGGAAAACAGATACTCTGAGTATAGGCACAGCGGTTACCCTAAATGTATTTTCTGAAGAAAAGGGAGCTGTTATAGCTTTTATAGGCATAGACAAAAGGATATTATAAACAAACATGTTCAGTGAGTACCTTGAAGGGGCATCTATAAAGTTTAGGAGTTTAGGGAAGCAGGAAAATCCTGGCAACTATGCTGTGTTGGTATTACACTGTGTTCTTTGTGAGGTTGTTGATCAATGCAGAGGTCAATTCTCAGATACATCCCCAAAGTTTAGCTAACAGCAGTGAGGACATGAGGTCAGATACAAGTCAGCACTAACAGTCTATCTTAGTAAAGATTCTCTCCCCAGCCTCCCATAAGCCTATCTTTTTATGTCTTCATGCAGAAGTTGCCCATCATGTATCTGCATGAAGAAATTCACAAAGATTTCTTTATGAATGTTTAGTTTTATGACATAATTAAATGTTCTGACCCCACTGCTGGCGTTTAGTGGGTTTCCTAGAGAGCGGGACTCTAGAAGATGACTCACTGGCTGAAGGGTGTTTGCACTTAGAGGTCTTGCTGCTTGTTGTACAACTTCTAGCCATGTTTTATGCTCATAATGCTCATTTATCTGCTGAGTTATTTCATTATAGATTTCTGTGGTGTTGATTATATCGCTATTTACGTTTATCTTTTGTAAATAGTTTATTCATTCCACAAAGTCATTGAATAACAGGCCCGCTTTCTGGCCCTGGGATTATAGCCAGAAGGCAATGCAGGCAGAATTTACTCGGGCTCATGTTCTACTTAGGGAGATAATACATTAATAGAGAAGGGGGAGGTGCAGCAGAAAGGAAGCGAAGAAAGCAGTGGGGGCGGGGGGAGTAGCACAGGCAGTGAGTGGGTGGGAAGAGAAAGCAGGCCAGGGCTAGGTTAGATGTCTTTAGGGACTTTGAACAGATGCTCAAATAAAAATAGGTCTGTAACCAGGGTGTTTTCTACCAGCACCCTAGTTCCTAAGTAATGATTCAGACTTAATTATTTACTGATAAATGCCTAGGCCATAAGCATGGGCTTGTTCCCTGACTAGCTCATAACATTCATAGCCTGTCTATTGTATTGTATTCTATGTGTGCCACATGACTGGTTACCCCTCCTCAGTTTCATATGTCCATTTCCTCAGAGTCCAGGTGACAAATGTCCTATGCCTCACTGACTCCCCAGAATTCCTGTCTCTCTCCCCAAACTCCCACCTCTTATTTCCTGCCTTTTCCTAATAGGCCATCAGCGTTTTATTGACAGATAATGCTTCTACACAATGCACAAAAATTCTCTACCTAGGTCTAGGATAGTATTCCAAGCATAGGAAACAGCAAGTGCCAAGGTTCTGATGAGGGGGACTGCTCTTCTAAAGGGGAGAGAGCCTTGAGTGAAAAGAGTCCTCAAAATATAGTTCTTTCACTCCTGAGGGAAAAAAATCATACTTTCTGCTTTGAGATTTTTCTACTTTTACATTGCTTTTTAGTCTCTCTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTTTCTCTCACACTCTGTCTCTCTCTGTCTCTCTCTGTTATACTTACTTCCGGTGGTGTATGCACATGTGTGTGGTTTATGCACTTGTGTGGGTTATGTGCGTGTGTGTGTGTGTGACACATGCATTTGCGTGTGGAGTATGCACACGTATGTGCTGGTATGCTCACTCGAGGCCAGAAGACATCCAGTGTCCTGGTTTATCAGTGTACCTTATTCCCTTTAGACAGGATCTCTGAACCTGGAGCTAGGCTGGCAGCCAGCAAGCCAGAGCAGTTCTCTGTGTGACTCCCAAGGCACCGGGACAGTAGGCACAAATGCCCATGCTCAGCTCTCTGTGTGGGTGCCCGGATGGGAACTCATGCTCGCAGGGCCGTCTCCAGAGCTCCTGTTGCTTTTTGTTAGCAATGCATGGACTTCTCTTGCTTTATGGGTATGTTAGCATTTCAGTAGCTTCGGAGTTTGTTGGTCTACACATGTAGCTATGTATTTCCACACTCCCCAGATTTAGTGCATTTGTTTGGGGTTCTTTTTTGAGTCATGCCACTGTCATGTGCTAAGGTTTCTTGACACGCTGGATGGAAGTGTTGGTTTGTGGTACTGGAGTTCAACCCTCGCCTCTCACAAGCTAAGCACTGGCTTTCCCACTCTGCTGCGTCCCAAGCCCCATGCTTTTGACAACCATTTCCTACCCCGCTCTGTTACCTTCTTTCAGACTTTTCCATCGGGAAAACTTCAGTTGTCTATTATTTGGAGTGCACACTGTATTTATCTGTCTTCCGGGACATCTGTCTGTCTGTGGGCATGTAGACTCACTGAATTGTCACTGTTGGGTTTACATCTCATTATATGCCTCCCCACCACTGCCTGCCAGAGTAAATATTTGGTAATATTTGTTAAATGAATAATGGATGACATTAAGTAGAACTTTTAGAAGTCATGTGCAAGTGTAGGCCATGCACACTTGAGAGCTGTAGCCATATCTGTGGAATTGATACCAGTGCAAACTGGAAAATTATCAGGATAGAACCGGAGGCCAAATGCTCCCACACAGATTACAGAAGCACGCTCAGAGATGAGGATGTAGCTGGGCCACAGAAAAGAACATTAGAGAGAATACAGCAGTGTCAAGTAAGAGAAGAGAAAGTACTGTGGACTGAGTGATTGGGAAGCCATGTGTGACCCAGGGAAGAGCGTGTTCAGTGCTAAGGGTCTGTGCTGGGATGGGCTGTGTGTGGGAGAGTGCAGAAGCAACTACAGCCTGACCGAAGGGAGGAAGAGAGAGAAGAGGACCTCTCTGTGTTCTTCAGGGCATGGATCTGAATTCTCCTCTAGACAAGGAGGAGCTAGGAGAGAGGAGAACAGGGTGAAGGTGAGGGAAGACAGTGAGTGCAGTGCAGAGCAATCACTGTCTGTTCAGTGGTGTCGTGTTGGTGGGGAAGTGTCTGGCTGCAGAGGATGTCTGGGTTTCTGTGCATGCGCAGTGATGGCTGAGTCCACTTCTCCTGTCACCGGGCTTTTTCCTCACCTTTGCAG
Seq C2 exon
GCCTGCCATGTTGTCTTTGAGCATCCTGTCTTCCTCGGAGGATCTCCTAGGCCGGTTTGTAAAACGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750:ENSRNOT00000040346:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]