HsaEX6101515 @ hg19
Exon Skipping
Gene
ENSG00000198939 | ZFP2
Description
zinc finger protein 2 homolog (mouse) [Source:HGNC Symbol;Acc:26138]
Coordinates
chr5:178339585-178343711:+
Coord C1 exon
chr5:178339585-178339720
Coord A exon
chr5:178339983-178340072
Coord C2 exon
chr5:178343566-178343711
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTCCTCTTAAGCAGGAA
3' ss Score
7.15
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTCAGGAGTCAGTGACCTTCAAGGATGTGTCCATAGATTTCTCTTGGGAAGAGTGGATTCAAGCAGATTCTGCTCAGAGGATGACCGTGTATGGGGAGGTGATGCTGGAGAACTACAGGAACCCGGTCTCACTGG
Seq A exon
GAAATCACCTTTCCAAACCCAATGGGACTTCCCAGCTGGAACGAGAACTGAGTCTGATGCAAAAAGAACCGCCTGAGGGTGGCTTTCGAG
Seq C2 exon
ATTTTCTTGGATATTGCTGTCAGATTAATCTGACATTTAGTCCTCTCATTATCCTGTCCCAGTCAAGGGGAGAAAGTATTGACTGAGTGCTGTGCTCAGCTCTTCCACAGCCAGCATCTCACTTACTTGACACAAAACATCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939-'1-7,'1-4,2-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGACCGTGTATGGGGA
R:
CTGTGGAAGAGCTGAGCACAG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)