RnoEX6047138 @ rn6
Exon Skipping
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36395480-36400471:-
Coord C1 exon
chr10:36400303-36400471
Coord A exon
chr10:36400034-36400123
Coord C2 exon
chr10:36395480-36395547
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTCTTCCCAAGCAGGGC
3' ss Score
8.47
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GAATCACTGATATACAAAGATGTGTCTGTGGACTTCACTTGGGAGGAGTGATGCAGCTATGTTCTGCACAGAGGAACCTGTATGGCAGGGTGATGCGGGAGAACTGGAGCACCCTGGTCTCCCTGGGTGAGCAACCCCACCTTCAGCCTTCTGCCTATGGAATTCACAG
Seq A exon
GGCATCAACCATCCAAACCAAATGTGATCTCTGACCTGGAACAAGAACTGACTCTGAGAAAAGGAGAATTCCCAGGTTGCATCTCTCTGG
Seq C2 exon
GCCTGCCATGTTGTCTTTGAGCATCCTGTCTTCCTCGGAGGATCTCCTAGGCCGGTTTGTAAAACGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAGGAGTGATGCAGCTA
R:
TCCGAGGAAGACAGGATGCTC
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]