BtaEX6036527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2371313-2375158:-
Coord C1 exon
chr7:2375036-2375158
Coord A exon
chr7:2374647-2374736
Coord C2 exon
chr7:2371313-2373285
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTTCCTAAGCAGGAC
3' ss Score
8.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTCAGGATTCAAGGATGTGTCTGCGGACTTCACCTGGGAGGAGCAGATCCATCTAGATTCTCCTCAGAGGAACCTGTATGGGGAAGTGATGCTGAGAAACTATAGGAACCTGGTTTCACTGG
Seq A exon
GACATCAGCTTTCCAAACCTAATGTGATTTCTCAGCTGGGTTGAGAACTGAACCTGATGACAAAAGAACATCCTGGGTGCATCTCCCCAG
Seq C2 exon
ACTGGAAGACCAAGACTTGAAACAAAAGAGTCAACAACGAAGCCCAAGTTCTTGAAGATTTATCTTATGGGGTAATAATGGAAAGGGAAGGTCTCTGGCATTCTTCTTTAGGGGAAACCTGGGAACCTGATAATTGGTTAGAGGGGCAACAGGAAAACCAGGATAGACATTTGGGCCAAGTGCACATTACCCATAAGGAAACCCTCACTGAGCGAAGGACATGTGGAGGTAATGAACTTGAAAGATGCTCCAGTCAGGGTTCAATCATTGATATACAACAAACTATTCCTGTGGGGAAAAGTCCTCACAACTGGAATTCACATGGAAAAGACACTAAACAAAATGCCGAATTAATTAAAACTCAAAGAATATTTGCCGGAGAGAAAGTCTATGAATGTAATGAGTGTGGGAAAACCTTCAGCCAGAGTTCGTCTCTTCTTAAGCACCAGAGAATTCATACGGGGGAGAAACCCTATAAGTGTAATGTATGTGAGAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF097235=Zn-ribbon_8=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTATGGGGAAGTGATGCT
R:
CAGGTTCCCAGGTTTCCCCTA
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]