BtaINT0164886 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039242 | ZNF10
Description
zinc finger protein 10 [Source:HGNC Symbol;Acc:HGNC:12879]
Coordinates
chr17:45157137-45163447:+
Coord C1 exon
chr17:45157137-45157232
Coord A exon
chr17:45157233-45161987
Coord C2 exon
chr17:45161988-45163447
Length
4755 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGCTTTTCCATTTCTTTCAGATT
3' ss Score
10.02
Exon sequences
Seq C1 exon
GGCATCAGCTTCCCAAACCAGATGTGATCCTGCGGTTGGAGAAGGGGGAGGAGCCGTGGCTGGTGGAGAGAGAGATTCACCAAGAGACCCAACCAG
Seq A exon
GTAAGGACCAGATCCCCTGCTCAGAGAAGGAATCGCTGGTCACTAGTTTTCCACATTTCAAAGACAAAGACTGAGTTTATGTACCTTCTGTTTCCCCATTGCTCGGCTGTCTTCTTCAGTCTTGTCACACTTCAATTTGCATTCATGAAAATTATCTTTCTATGGATGTGCTTGGCTCCAGCCCTGTTCATAGTGCTTTCTTGATTCTTACCACTAGCTCTAGCGTGTGCACCCTCTTGTTTATCATAGAATTACTTCTCATCTTTGACTGTCCTTTCCCTATCTTGTGTCCCTTCCCATAGCATTCATTCTGCTGCTTTGTGTAAGCTCTGCTCTGGGACCTCATCACCCGCTCCTGCTCTGGGTTTGTTTTCTGCCAGGTAGAAGACTGCTACAAACAACTCACCAGTCCTTGTTGACGTAACTCTCCTTCCTTCCCAGAACTGCTGCTCTCAAAAACACCTGTTTTCTCACTGTCCTCTAGCTTTATTTAATGTTCTTTTTCAATTTACTCCTATTCATTTTAATCTTCACATCTCCAATTTTCAGATTGTTATGAGGATTCCTAGCATCATTCCTTTTCCTAACTTCCCTGTGTAGAGCAGATCAGCCTTCTGGGCTAAGAAATAGAAGGCAGTCCTCCATCTTCCTCCTCCTCTGTTCCCACTGAGTGATCATTTCCCTTACCTCTGTTTCTAAGCTCAGTGCCCTGACATCTTTCTCCTCAGGCCAGCCATCCTGATCTGGATCATGCTGCCAATGGCCAACTTCACATGGGGCAGAGAAGCCAGGATACGTGCCAGTGACCCCTGTACCCTTGTGGGCACCATGGCCCCCCAGGCCCAGTGCAGTCCAGGCATGCTGTAACCCTCCACAGCCGTTTCCCTCTGACACATCCACACATACCAGGCATTCCCTGCATTTCAGGCTTCCCGTGTGGTGTAACCAGAGTCTCAGTCATCCTAGAAGTTTCACCTCCTGTTCTTTGTGAAATCTTTTGACTTGTTAAGTACAGGTTCCTTAAGGTTTTCTGAGCTTTCATTTTGTTTATACCTTTAAAAAAATTATTTATTTATTTTTGGCTGTGCTGGGTCTTTGTTGCTGTGTTGGCACTAGTTGCAGCTAGTGGGGCTGTTCTCTAGTTGTGGTTCACGGGCATCTCATTGCAGTGACTTCTCGTTGTAGAGCATGGGCTTCAGGGCGCACAGGCTTCAGTAGTTGTGGTGCATGGGCTTAGTTGCCCCTGGCATCTAGCATCCTCCCAGACGAAAATTGGACCCATGTCTCCTGCATTGGCAGGCGGATTCTTATCCACTGTGCCACTAGGGAAATCCTGTTTCTACTCTTAAATGTCATAAATTGTTTCAGACCTTTTTACACTGGGCCTTGTAGGTGACTGTATCAAATACCTGTCTCAGGGAAGGTCTCTTAGACACTGGAAAGTACTTGATCCCTCAGCTGCTTTGGAGCCATAGCACGAAAAACTGTTCTCCGTTTCTCTTTTTTCCCTATTTTTTCCTGTCTGTATTTTTTCCATTCCTGTGTTGAGTTTAGCAAGCTTTCCTGGATGTCTATCTGTTGACAAGTATCCAAAAATAACTGTATAACCAACAGTTTACATTTTGGTGGAAAATTTATTGTCAAAGAAATACTAAAGTTCCATATATGTGCTTAATCACCTGGAATTTGAGGGAATCTACAAGCCATGGGAACTTCATTATTAAAATGAAAAGTATTATGGGTGATGGCTTTAAAAACTCAGATGAGTTCATTAATGGGTGCTACAGATTTTGAAGATAACTCACGTGGGTTATCTCCCATGTTACAGAATACGTGGAATATTTTTAGGACTTTAAATACATTTGTATTTTCTGTTGCTTTACTCAGACTTGTCTGTCCATACCCAGCTCCACCCCCCATCAAATGTGTTCATTTTAGAATTTTCCAGCTGGCATTTGTAGTTTGAAAAACTTATCCATGGGATTTTGATGCATGAAGTAGAGGAGAGGAAAAAGATGGCATGTGCCTATCAAAACTCATCAGGGTAGAGGTATTTGTAAGTGTTGAGTTCAGTTCAGTCATTCAGTCGTGTCTGACTCTTTGCGACCCCATGAATCGCAGAACGCCAGGCCTCCCTGTCCATCACCAACTCTCAGAGTTCACTCAAACTCACATCAATCAAGTCGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAACTAAATGGACTCTGTTGCTGTTTATTGTTTAGTTGCTAGTCATGTCCAGCTCTTTTGCAACCTGATGGACTGTAGCCTGCCAGACTCCTCTGTCCATGGGATTTTCCAGGCAAAAAGATTGGAGTGAGTTGCCACTTTCTTCTCCAGGTGGATCTTCCTGACCTGGGCTCAAACCCACATTTCCTGCATTGGCAGGTGGATTCTTAACCACTGAGCCACAGGGAAGCCCAATGAACTCTGTTGTTAAGCCTTTAAAAGGAAGTAAATAACTGCACTTTTCTATAACATGGATGAACTTTGAGGACAGTCTGCTGGGTGAAATAAATCAGTCACAAAAGAACAAATAGTGTATCATTCCACATATATAAGGCCCTTGAAGTAGCCAAAATCATAAAGACACAAAATATACTGGTAATTGCTGAGCACTGGGTTGAGAGGAGATTGTAGCATTATTGTTTAACAGTATAGAGTTTCCATTTTACAAGATGAAAACAGTTGGTGATGGCTGCACAAAAATGTGAAGATACTTAATACTTGAATCATGCACTTAAAAATGGTTAAGATGGTGCATTTAAAAAAATTTTTAATTGAAGGATAATTGCTTTACAGAATTTTGTGGTTTTCTCTCATACATCAACAAGAATCAGCCATAGGTACATTTTATGTTATATGTTATATGTGTATATATATATATATATATATACATACATATACATATACATATACATTTTATGTTATATGTTATATATATATACATTATATATATATACATTTTATGTTATATGTTATATGTATATATATTATATATACATATAATATATATATAACATATATTATATGTTATATTTTTTTAATCACAATTAAAAAAAAAAGAAATCAGAGTGGGGAAGAAACAAATGACTAACAAAGTTGTGAATGAAAATTAGGACTGGGAATGGGGATTGGGTTGTATAAAGAAGGCAGTTAGGAGCCTGGCACAGGGATTACTTGCCAGGTGTCTTAGTTTCCTATGGCAACTAAAACTAGTTCCACAAATCAGGTGGCTTAAATCAACACATTTATTTTCTCACAGTTCTAGAGGTCTGAAGCCAAGGTGTGGGCAGGGCTGTGTGCCTTCTGAGGCTTCAGGGGAGGATCCTTCCTGCCTCTCCTAACTTTGGTGCCCCAGGTGCCCTTTGGCTTGTAGACACATCACCTCCATCTTCACATGGTCAGCTCCCCTGTGTGTCTGTCTCTGTGTCTCCTCTCCTTTCCTTGTAAGGACTCCAGTCAGATGGGATCAGGGTCCTCCTACTCCAGCAATACTTCATCTTAACTAATTACATTTGCAATGATCCTGTTTCCAGATAAGATCATAACCTGTAATGTTGGGGGTTAAGACTTCAACATATCTTCTTTGGGGAACACAATTCACCCCGTATGTCAGGTAAGAATAGATATTGCCCCACTTATATAGGAAGAGGTGATATTGGGTAAATTGTGGCTTTTTTTCTAGATTTCAGAAACAAACATTTTTGCCAAAAGGCATTGAGAAACAAATACAGGCTCTGAACCAGGGAAAGTAAGTTGCAGTAGTATGCATGTGTATAAGCAGAAGGGTGAAAAGTCCAGGAGAATGTGAATTAGGGTTCAGGTTCTGAGTTAATATCCTGTGTTAGTCCTGTCAATTTTAATAAAGTCTTGATGTCTCAGAACAAAGGAATCAAAGCAGAAGGCAGGAATGATGACAGCAGTGAGCAGTACAAACTGTACTGCTTTGGTGATGAACTCCCACCTTACATGATACTTAGGATAACCTTATAGGTCCTTAGATGACAGATAAGCAATATGATTTTTGAAAAGTTTAGCACTTTGTCTAAATTCACCACTAGTAGTGGCAAAGCTTAGGTTAGAAGCCATATCTGGGTAACTTAGGTGCAGTTGCTCTTCCAGCCTATTACACAGCCTTTCTGAAAGGTTCACTATGTCAGACACCTGGAATTATTCTGCACTGCTTTGGTGATATACATAAGAACCATTTCCTGATACAGAGCTGTGTTCATGGTTTAGGAATGTGAAGAATTCATGTCAGAGGAGGGCCTGGCAGCAAGTAGACCCATTAGGCTCTTATATCATCATTAGTTGAATTAGGTAATGACAGCAGCCCCTTCTGTGGGTTTCCTAAACTGCCACCCCAGCACTGAATATCTTGATCCCACATGTCACAGCTAATCCTGTGGTTTCTCTTACTCTCTTTGCTCCTTTTATATGCATATTATAGCCCATCACATTTCCTGTCAATGAGTCTTCTATCCCTTTTTCTCTATCACAGTTACAAAACCATATTTGAAAGCAACATTACAGGACTTAACATACTTTTTTCTACATCCATCCTACCATTCTGACCTTAATACTTCTTTTAGTTATAGAAGCTTTTCCATTTCTTTCAG
Seq C2 exon
ATTTGGAAACTTCAGTTGAAATTAAATCAACTTCCCATAAGAGCATTTCTAATGATAAATACTCCTGTGATGTTAAAATGGAAAGAATGCCAAAGAGTGATCTCTGGTATTTGTCACTGGAAGAAGTCTGGACTTGTGGCGGTCAGTTGGACAGGCCCCAGGACAGCCAGGAGAGACATCTGAGGCAAGTGGCATTCACCCAAAAGAAAGTACTTCCTCAGGAGAGAGTATGTGAAAATGGGAAGTACAGGGGAAACTGTTTTCTGCACTCTCAACTAGTACTGCAAGAGTATTTCTGTAAACATGACTCAAATCCTAAAGGTTTGAAACACAATTTGGTTTTCAGTGGCCATCAGGAAAGCTGTGCAAGCAACAGTAATGAATCCAGTCAAACTTTCTGTCAGAACATCCGCCTTATTCAATTTGCAAGAACTCAAGCAAGAGATAAATCATACAGATGCCCTGATAACAATTCTCTTACTCATGGTACATCCCTTGGTATATCAAAGGGTGTGCATAGAGAAAAACCCTATGAATGTAAGGAATGTGGAAAATTCTTCAGCTGGCGTTCTAATCTTACCAGGCACCGTCTTATTCATACTGGAGAAAAACCTTATGAATGTAAGGAATGTGGAAAATCTTTCAGCCGAAGTTCTCACCTCATAGGACATCAAAAGACTCATACTGGTGAAGAACCCTATGAGTGTAAAGAATGTGGAAAATCCTTCAGCTGGTTCTCTCACCTTGTTACCCATCAGAGAATTCATACAGGAGACAAACTGTACACATGTAATCAGTGTGGAAAGTCTTTTGTTCACAGCTCTAGGCTTATTAGGCACCAGAGAACTCACACTGGAGAGAAACCCTATGAATGTCCTGAATGTGGGAAATCTTTCAGACAGAGCACACATCTCATTCTGCATCAGAGAACTCATGTTAGAGTGAGGCCCTATGAATGCAGTGAATGTGGGAAGTCTTATAGCCAGAGATCTCACCTTGTTGTCCATCACAGAACTCACACTGGACTGAAACCCTTTGAGTGTAAAGACTGTGGAAAATGCTTCAGTCGAAGCTCTCACCTTTTCTCACATCAGAGAACCCATACTGGGGAGAAGCCATATGAATGCCATGACTGTGGAAAATCCTTCAGCCAGAGCTCTGCCCTCATTGTGCACCAGAGAATTCATACTGGAGAGAAACCATATGAGTGTTGTCAGTGTGGGAAAGCCTTCATTAGAAAGAATGACCTTATTAAGCATCAGAGGGTTCATGTTGGAGATGAGACCTATAAATGTAATCAGTGTGGAATCATCTTCAGCCAGAACTCTCCACTTATAGTGTATCAAATAGCTCATACTGGAGAGCAGTTCTTAACATGTAATCAGTGTGGGACAGCACTTGTTAATACCCCTAATGTTATTAGATACCAGACAAATATTATTAGGGAAAATGCATATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039242:ENSBTAT00000056931:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF0009621=zf-C2H2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development