HsaINT0186151 @ hg38
Intron Retention
Gene
ENSG00000256223 | ZNF10
Description
zinc finger protein 10 [Source:HGNC Symbol;Acc:HGNC:12879]
Coordinates
chr12:133151809-133159465:+
Coord C1 exon
chr12:133151809-133151904
Coord A exon
chr12:133151905-133155502
Coord C2 exon
chr12:133155503-133159465
Length
3598 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACATTTTTCATTTCTTTCAGATT
3' ss Score
11.75
Exon sequences
Seq C1 exon
GTTATCAGCTTACTAAGCCAGATGTGATCCTCCGGTTGGAGAAGGGAGAAGAGCCCTGGCTGGTGGAGAGAGAAATTCACCAAGAGACCCATCCTG
Seq A exon
GTGAGGACCAGTCAAGAGTTGTCATAGGCAGCAGCCCAGATGGGCTGTGAGGTGCCAGAACTTCTAGAGATAGTGGTCACTGGCCCTCCTCACAGGCCCTTCTTCCTGGGAAGACTGAGTTTATCTGGCCCCTGTTTCCCCACTGCCAGTCTTTACATTCCATTTGCATTCAGAGGCAAAGGTTTCTCTGTCTGTTGACGTGCTTGGTTTCAGCGCTTGCACGTGTCGCTCTCCTAATTGTTACCACTCACTCTAGCATCTTGTGCTTTCGTTTGTCATAGAATCACTTCTTGCATTTTTGCCTCTCTTTGTTCTTTCATGTGACCCCTTCCCACAACTCAGTTCTCTGTGCAAGCTCTGGAGTGGGACTCTTATCACCTTCTTTTCTGAGAGTTTGTTTTCTGCCAGGTAGAAAACTGCTGCAGAGAGCTCATAATTCCTGTTGCCTCAACTCTCCTTCCTTTCCAGAATGGCTGCTCACAGAAACACCAGTTTTTCCTACTGTACTTTAGATCTTTTTTTCTTTTCGAGATGGAGTTTCACTCAGTCTCCCAGGCTGGAGTGTAGTGGCGCGATCTAGGCTCACTGCAACCTCCGCCTCCCAGGTTTAAGCGATTCTTCCGCCTTAGCCTCCCAAAGAACCAGGAATTACAGGCATGCACCACCACGCCCAGCTAATTTTTGTATTTTTAGGAGAGATAGGGTTTTACCATGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCCACCTCGGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCTCTATCTAGTTTTGTATTTAATGTTTTAAAAATTTATTTATAGGCATTTCCCTGCATCTCAGACTTTGAGTGTGATGTAAATTAAATCTGAGTCTTACTTGTCCTGTAATTTAGCCTCAAGTTCTTTCCCATGAAGGCTTTTATGATTCCTCATTAAGTATTGGCCTCTTCCTCTTCTGAACTTCCACTTAGTTTAAATCTCTACTTTGAAATATTATCATAAGCTCTTTTTTACTTTTTAGTATTTGCCTTGTAGGTGATTGTATCAAAATGGTATCTCAAAGCAAGTCTTTCTTTGGGACCATGGGAGGAAATATTGTTATATTTTCTTTTTATTACTTACCTTCTTTCTTTCTTTTCTATTTTGTTCATCTAGTAAGCTTTCCTGAATGTCTGTTGACAAGTATCCAAAAATAACAATTATTAACTGGACCCAGCAGTTTATATTTTTATTGAGAATTTATTGTCAAAAGAAATACTCAGACTTCATGGGCTTAAAGGCATGGAGTTTTACAGAATCTACAAGGCTGTTAAATTCATTATCAAATCAAAAAATATAATGAATGATGATTTTTAAAAATCAGATGATTAGTTGATTGATGGGTCCAACAGACTTCGACAATAACTTACTGGCATGGTTGTATTACATAATATGTGGAAGATTTTAGGATATTAATAAAACACCTCATTCTTATGACCAAACTCTCCACTCAGAATTGTCCTCCATAAGTGCTCAGCACCCCCCTTATCATAGATATTCTTCATAGAATCTTCCAGTTGGCATTTGTAGGTTGAAAAACTTCTCCATAAGATTTTCTGATGTTCTGGGTTGGGGAAAGGGAGGAAAGGGTGGTGTATTTCCTATTAAAAATCATCAGGATGGGGAAGAAACTAGGAACTAACTAAGTGGTAAGGGACAGGACTGGTCGGGGTGGGATTGTATAAGGAAGTCATTTAGGGACCAGGCCTGGCACAGGGATCATTTACCAGGTGTATTAGTTTCCTGGGGCTGCGGTAACAAAGAACCAGCAGTTAGGTGGCTCAAAACAACCAAAATGTATCATGTCACAGCTGGAGGCTGTTAAGTCTAAAATGAAGATGTCAGTGGGGCTCTGCTACGCTTCTAGGAGAGGGTCTTTCCTTATCTCTTCCAGGCTCTGCTGGCCCCAGGTGTTCCTTGGCTTGTGGATATATCATTCCAGTCTTGGTCTCCATGTTCACATGGTCTCTTCCCCTGTGTCTGTGTCTTTTTTATGGAGGACCACCCTCATACTGGATTAGGGGCCCATCCTATTTCTGGTACTACCTCATCATAACTAATTACATCTGGAAAGACTGTATTTCCAAATATGGTCATATTCTGAGATACTGAGGATTAAAACTTCAACATACCTTTTTGTCGGCGGGGGGGATACAGTTTAACCCATAATACCAGGTAAGAGTGGAATGTCACCCCACTTATGTAAGATGAAGTGGTATCATCAGTGTATTTTTTAGGTTTGGGATTATATGTTTTACCTGAAAGACATTGAGAAACAGATAAAGCTCTTATTCAAGAGAAATAATTTGCAGTAATATACACAGGTAGCAGATGGCAGAAATTCTAAGAGCGTATGGGTCAGGCTTCAGATTCTAAGTTCACATCTTGTGGTAGTAGTCCTATCAGTTGTTAAGTCCTTATGTTTCAGAGCGAAGAAATCAAAAAAATGAGAAGAATGATGATGATTATTGTAAATCTTATTGCTTTGACCATAAATGTGCCAGAGACTGTAATAGGCTCATGCTTTATATAATATAATAATCTTAAATAACAAATACTGTCATCCTTAGATTACAGATAAGCAAAATGAATTCTTCAAAGTTTAGCAACTCGTCTAAATTCACCACTAGTCGTAATATAAAACTTAGAACTTGCATCTTGGTAACTTTTGTGCAGTTACTCTTCCACCTTGTCATGTAGCTGCTCTGAGAGGTCTGTTGTGTCACTCATCTGGGTGTTATTCTATAGTGCTTCTGTGATTTGGATAGAAAGCATTGCCTGACGTATGGCTGCATTCATGGTTTAAGAATACTAAATTGGGCCGGACGCACTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTAAGGCGGGTGGATCACCTGAAGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTGCTAAAAATATTAAAAATTAACCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCATTTGAACCTGGGAGGCGGAGGTTGCATTGAGCCAAGATTGTGTCATTGCACTCCAGCCTGGACAACAAGAGCGAAACTGTCTCAAAAAAAAAAAAAAGAGAGAGAATACTAAATTGATAGTAATGTGAAGAATGTGTGTCAGGGGAAAGTCCTGACAACAAGTAGACAGGTGAGGAACTTAGACTGTTAATATCTGGATTAGAAAATGAGAGTGCAGTCCTTTTTATGGAATTTCCCTTATTTCTACCCTCACCATTGATACCCTGATCCCATGTGTCATGCTGTGTCCTGTGGCTTCTCCTTACTCCTTTTGCCCTTTGTGAGTACTGTATACCACAATGCATTTATTGTTTACCGCTCCATTCTTCCTTTTCTCATTCTCTATCAAAGTTATAAAGCCATATTTGAAAGCAACTGTGTACATCTTGCATACTTTGTCTCCACATACATCCTAGCATTCTCACCTTAATACTCTGTTTAGTTACACAAACATTTTTCATTTCTTTCAG
Seq C2 exon
ATTCAGAGACTGCATTTGAAATCAAATCATCAGTTTCCAGCAGGAGCATTTTTAAAGATAAGCAATCCTGTGACATTAAAATGGAAGGAATGGCAAGGAATGATCTCTGGTATTTGTCATTAGAAGAAGTCTGGAAATGTAGAGACCAGTTAGACAAGTATCAGGAAAACCCAGAGAGACATTTGAGGCAAGTGGCATTCACCCAAAAGAAAGTACTTACTCAGGAGAGAGTCTCTGAAAGTGGTAAATATGGGGGAAACTGTCTTCTTCCTGCTCAGCTAGTACTGAGAGAGTATTTCCATAAACGTGACTCACATACTAAAAGTTTAAAACATGATTTAGTTCTTAATGGTCATCAGGACAGTTGTGCAAGTAACAGTAATGAATGTGGTCAAACTTTCTGTCAAAACATTCACCTTATTCAGTTTGCAAGAACTCACACAGGTGATAAATCCTACAAATGCCCTGATAATGACAACTCTCTTACTCATGGTTCATCTCTTGGTATATCAAAGGGCATACATAGAGAGAAACCCTATGAATGTAAGGAATGTGGAAAATTCTTCAGCTGGCGCTCTAATCTTACTAGGCATCAGCTTATTCATACTGGAGAAAAACCCTATGAGTGTAAAGAATGTGGAAAGTCTTTCAGCCGGAGTTCTCACCTCATTGGACATCAAAAGACCCATACTGGTGAGGAACCCTATGAATGTAAAGAATGTGGAAAATCCTTCAGCTGGTTCTCTCACCTTGTTACTCATCAGAGAACTCATACAGGAGACAAACTGTACACATGTAATCAGTGTGGGAAATCTTTTGTTCATAGCTCTAGGCTTATTAGACACCAGAGGACACATACTGGAGAGAAACCCTATGAATGTCCTGAATGTGGGAAATCTTTCAGACAGAGCACACATCTCATTCTGCATCAGAGAACCCATGTGAGAGTGAGGCCCTATGAATGCAATGAATGTGGAAAGTCTTACAGCCAGAGATCTCACCTTGTTGTGCATCATAGAATTCACACTGGACTAAAACCTTTTGAGTGTAAGGATTGTGGAAAATGTTTTAGTCGAAGCTCTCACCTTTATTCACATCAAAGAACCCACACTGGAGAGAAACCATATGAGTGTCATGATTGTGGAAAATCTTTCAGCCAGAGTTCTGCCCTTATTGTGCATCAGAGGATACACACTGGAGAGAAACCATATGAATGCTGTCAGTGTGGGAAAGCCTTCATCCGGAAGAATGACCTCATTAAGCACCAGAGAATTCATGTTGGAGAAGAGACCTATAAATGTAATCAATGTGGCATTATCTTCAGCCAGAACTCTCCATTTATAGTTCATCAAATAGCTCACACTGGAGAGCAGTTCTTAACATGCAATCAATGTGGGACAGCGCTTGTTAATACCTCTAACCTTATTGGATACCAGACAAATCATATTAGAGAAAATGCTTACTAATAAATATGGGAATTTTTCACAAAGAGCAATGACTTTATTTTGCATTGGAGAACTCCTGGAGATAAGCTGTACAAATTGAATCTATGTGGAAATGCTTTCAGTCTTGTTACTATCCTATTGCACATTAGAGAATTGGTCCTGGAAGGGAAAGAAACCACAGATTTTATTTCAGTACACAAATCCATCAGATTTTCTTCTTTTCATGAATTCCTACAGAAGTAATTGGCCTGAGAGCATTCTTGACCAAGTCTTAAATGCTAGAATCTGAGAAGGAATTATTAAATAGGTGAGTTGTTGAGCGAGAACCCCTTCATTTGAAAAGAAATGAGTATGCTACTATAGGGAGAGTTGTTGCTGAGAATTAAGAAATGATACAGTTAATGCAACAAAAGATGGAAAATAATATTTCAGTCAATATGTCATTGTTTTCTTGACTATGTCTCTCTTCTGGGACATTTAGTAGTGTTTGGTATGTTTTATGTGTCTGGTAGAAACCATATTTTGGTTAACAGCAAGAAAAATGCTTATAATGTAGTACAATTAAAAACAACACATCTCCACTACCAGTGCTAACCCATTTTTAAGTACATTTGCATGTGGGCAAGAATTGAAAGTATACAGATAATTGAACAGAATTGATTTGTTAGATAAGGAGATTTTGACTGAGTTTTATAGTCTGTTTAATGTTGCTGTAATAATTATTTTAAGAAACTTTTAAATATTGTAAGAGGATATCTAGTTTCTCTATTCTACCATCAAAGAAGCTTTTGAGTACCACCTGTTAATGAGCTTTCCTATTCTAAATTGTTTTGGGTCACAGAGTTCCACTTTTTCCACTCTTATTAGCACTGCAAAAGCTCCTGAGAATTTAAAAACACAGTAATTCTCTGGATGTTAGGACCTAGGGGAACATTGGGCATTTGAACATATCAGGGAGGGTCCCCATTTTAGTGGGAACAAGTATTTAAACAATATTTAGAGCAAGTGTCCTCATGTGATAAACAGAGCACAGTCCAAAGATACCCTCTTTCTCAAGGTAGTCTTTTATCTTTATAAAGAAAGATTAGTGTTTAAGAGCGTAGACTTGAGCTAGACTACCCAGGTTGAAACCCCACTAGCTGGGTGATCTTGAACATGCTGCTTAGCTTCTCTGTGCCAAACTTACTGATATCCTCATCTGTAAATTAGCGATAATAATAGTACTTACCTGGTAGGATTATGGTGAGTATTAAATGAGTAAATGGAAACAGCTTAGAATAGTGCCTGACATATATTATGTTCTCTGTAGTTACTGGCTGTGATTATTAATAATATTGCCGCACCCTAATATCTGTTATTTAATTGAAATCTGCTTGTGTGCTTATAAGAATTTACTGAGTTCTCACTTCCCTTACAGTCATACATGGTTTTTCCCTTTTGCCTAAATCAGAACTCAACAGCCTGGGAAAATCACTGACAAATAGTGGATATAGGTTTCATTTCTGAGGATCAATAAACAGCTTGTAATGTTGTATACACATTTATTCTGTTTGTACAAAGGTTTTCCATTCTATGGAGAGGATCCCAGTCTTCAGATTCTCTGGTAAGTTAATAACCCACAAAAGATTCAGGAAGAGGATCTATTTTAATTTTCTCTTTCATTCTATAAATCAGTCTGTTGTATATAGGGACTGACCATGATTCTCCATTTTCTGGCATAAATATTAGCTGCTCAATGATTGATTGTTGAATGATAGATGAAGTATTGCTGAAGCCAACCAGAGATCTTGATCTCTCTCTGAGGAAAAAACCTAGAAATGATGGTTAGAATCAGGAGACTTGAGAACTACGAGGAACATGGCAGCCTCTAGCTCATACTTGTCGTTGTACAATTGAGATCAAGTGAATTGGCCCCGGTCTCACATTTTCAGTGAAGTCAGACTCAGAACTAGGTCCTGGGTTTCATGTTTCCTGCTGCTCTTCTCACTGTGTACACACCATGCCCACATACAACATACCTATCAGAAATGGTTTTCATTAAGGGAGTAGAATAGTCACTTAACTGGGGCTCTTAACATTGCTAATAACCTGTGGCTCAATTTCCTCAACTGTATAATGAGGTTACTACTAGTATCTACCTCAAAGCGTTGTCATGTGGATTGAGATGATATGTATGAATCACATAAAAGAGTGCCTGGCACATAGTAGGTGCCATTAATAATATTACTATTGTTAACACCTTAAGGGTCTAACTTGTAATGAAGACAGAAATATGTATGAGGATGATCACTGAAATATTTATGACAGTGCATAATTTGCAAAATAAAAAATGTACACTAGCATAATATTTGTGGCATATCCGTGTAATGGAAGATTATGCAGGCATTAAAATATGTACACAAAAAGTTTGGTAAAGGAAAAATGCTGTCATGTGTTACAAAAGCATGATAAATAATTGTTAATATGGAATAAGCTCAAATATGTCAAAATAAATGTAAAAAATGAGTGTTGCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256223:ENST00000248211:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains