HsaINT0186151 @ hg19
Intron Retention
Gene
ENSG00000090612 | ZNF10
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:13061]
Coordinates
chr12:133728395-133736049:+
Coord C1 exon
chr12:133728395-133728490
Coord A exon
chr12:133728491-133732088
Coord C2 exon
chr12:133732089-133736049
Length
3598 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACATTTTTCATTTCTTTCAGATT
3' ss Score
11.75
Exon sequences
Seq C1 exon
GTTATCAGCTTACTAAGCCAGATGTGATCCTCCGGTTGGAGAAGGGAGAAGAGCCCTGGCTGGTGGAGAGAGAAATTCACCAAGAGACCCATCCTG
Seq A exon
GTGAGGACCAGTCAAGAGTTGTCATAGGCAGCAGCCCAGATGGGCTGTGAGGTGCCAGAACTTCTAGAGATAGTGGTCACTGGCCCTCCTCACAGGCCCTTCTTCCTGGGAAGACTGAGTTTATCTGGCCCCTGTTTCCCCACTGCCAGTCTTTACATTCCATTTGCATTCAGAGGCAAAGGTTTCTCTGTCTGTTGACGTGCTTGGTTTCAGCGCTTGCACGTGTCGCTCTCCTAATTGTTACCACTCACTCTAGCATCTTGTGCTTTCGTTTGTCATAGAATCACTTCTTGCATTTTTGCCTCTCTTTGTTCTTTCATGTGACCCCTTCCCACAACTCAGTTCTCTGTGCAAGCTCTGGAGTGGGACTCTTATCACCTTCTTTTCTGAGAGTTTGTTTTCTGCCAGGTAGAAAACTGCTGCAGAGAGCTCATAATTCCTGTTGCCTCAACTCTCCTTCCTTTCCAGAATGGCTGCTCACAGAAACACCAGTTTTTCCTACTGTACTTTAGATCTTTTTTTCTTTTCGAGATGGAGTTTCACTCAGTCTCCCAGGCTGGAGTGTAGTGGCGCGATCTAGGCTCACTGCAACCTCCGCCTCCCAGGTTTAAGCGATTCTTCCGCCTTAGCCTCCCAAAGAACCAGGAATTACAGGCATGCACCACCACGCCCAGCTAATTTTTGTATTTTTAGGAGAGATAGGGTTTTACCATGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCCACCTCGGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCTCTATCTAGTTTTGTATTTAATGTTTTAAAAATTTATTTATAGGCATTTCCCTGCATCTCAGACTTTGAGTGTGATGTAAATTAAATCTGAGTCTTACTTGTCCTGTAATTTAGCCTCAAGTTCTTTCCCATGAAGGCTTTTATGATTCCTCATTAAGTATTGGCCTCTTCCTCTTCTGAACTTCCACTTAGTTTAAATCTCTACTTTGAAATATTATCATAAGCTCTTTTTTACTTTTTAGTATTTGCCTTGTAGGTGATTGTATCAAAATGGTATCTCAAAGCAAGTCTTTCTTTGGGACCATGGGAGGAAATATTGTTATATTTTCTTTTTATTACTTACCTTCTTTCTTTCTTTTCTATTTTGTTCATCTAGTAAGCTTTCCTGAATGTCTGTTGACAAGTATCCAAAAATAACAATTATTAACTGGACCCAGCAGTTTATATTTTTATTGAGAATTTATTGTCAAAAGAAATACTCAGACTTCATGGGCTTAAAGGCATGGAGTTTTACAGAATCTACAAGGCTGTTAAATTCATTATCAAATCAAAAAATATAATGAATGATGATTTTTAAAAATCAGATGATTAGTTGATTGATGGGTCCAACAGACTTCGACAATAACTTACTGGCATGGTTGTATTACATAATATGTGGAAGATTTTAGGATATTAATAAAACACCTCATTCTTATGACCAAACTCTCCACTCAGAATTGTCCTCCATAAGTGCTCAGCACCCCCCTTATCATAGATATTCTTCATAGAATCTTCCAGTTGGCATTTGTAGGTTGAAAAACTTCTCCATAAGATTTTCTGATGTTCTGGGTTGGGGAAAGGGAGGAAAGGGTGGTGTATTTCCTATTAAAAATCATCAGGATGGGGAAGAAACTAGGAACTAACTAAGTGGTAAGGGACAGGACTGGTCGGGGTGGGATTGTATAAGGAAGTCATTTAGGGACCAGGCCTGGCACAGGGATCATTTACCAGGTGTATTAGTTTCCTGGGGCTGCGGTAACAAAGAACCAGCAGTTAGGTGGCTCAAAACAACCAAAATGTATCATGTCACAGCTGGAGGCTGTTAAGTCTAAAATGAAGATGTCAGTGGGGCTCTGCTACGCTTCTAGGAGAGGGTCTTTCCTTATCTCTTCCAGGCTCTGCTGGCCCCAGGTGTTCCTTGGCTTGTGGATATATCATTCCAGTCTTGGTCTCCATGTTCACATGGTCTCTTCCCCTGTGTCTGTGTCTTTTTTATGGAGGACCACCCTCATACTGGATTAGGGGCCCATCCTATTTCTGGTACTACCTCATCATAACTAATTACATCTGGAAAGACTGTATTTCCAAATATGGTCATATTCTGAGATACTGAGGATTAAAACTTCAACATACCTTTTTGTCGGCGGGGGGGATACAGTTTAACCCATAATACCAGGTAAGAGTGGAATGTCACCCCACTTATGTAAGATGAAGTGGTATCATCAGTGTATTTTTTAGGTTTGGGATTATATGTTTTACCTGAAAGACATTGAGAAACAGATAAAGCTCTTATTCAAGAGAAATAATTTGCAGTAATATACACAGGTAGCAGATGGCAGAAATTCTAAGAGCGTATGGGTCAGGCTTCAGATTCTAAGTTCACATCTTGTGGTAGTAGTCCTATCAGTTGTTAAGTCCTTATGTTTCAGAGCGAAGAAATCAAAAAAATGAGAAGAATGATGATGATTATTGTAAATCTTATTGCTTTGACCATAAATGTGCCAGAGACTGTAATAGGCTCATGCTTTATATAATATAATAATCTTAAATAACAAATACTGTCATCCTTAGATTACAGATAAGCAAAATGAATTCTTCAAAGTTTAGCAACTCGTCTAAATTCACCACTAGTCGTAATATAAAACTTAGAACTTGCATCTTGGTAACTTTTGTGCAGTTACTCTTCCACCTTGTCATGTAGCTGCTCTGAGAGGTCTGTTGTGTCACTCATCTGGGTGTTATTCTATAGTGCTTCTGTGATTTGGATAGAAAGCATTGCCTGACGTATGGCTGCATTCATGGTTTAAGAATACTAAATTGGGCCGGACGCACTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTAAGGCGGGTGGATCACCTGAAGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTGCTAAAAATATTAAAAATTAACCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCATTTGAACCTGGGAGGCGGAGGTTGCATTGAGCCAAGATTGTGTCATTGCACTCCAGCCTGGACAACAAGAGCGAAACTGTCTCAAAAAAAAAAAAAAGAGAGAGAATACTAAATTGATAGTAATGTGAAGAATGTGTGTCAGGGGAAAGTCCTGACAACAAGTAGACAGGTGAGGAACTTAGACTGTTAATATCTGGATTAGAAAATGAGAGTGCAGTCCTTTTTATGGAATTTCCCTTATTTCTACCCTCACCATTGATACCCTGATCCCATGTGTCATGCTGTGTCCTGTGGCTTCTCCTTACTCCTTTTGCCCTTTGTGAGTACTGTATACCACAATGCATTTATTGTTTACCGCTCCATTCTTCCTTTTCTCATTCTCTATCAAAGTTATAAAGCCATATTTGAAAGCAACTGTGTACATCTTGCATACTTTGTCTCCACATACATCCTAGCATTCTCACCTTAATACTCTGTTTAGTTACACAAACATTTTTCATTTCTTTCAG
Seq C2 exon
ATTCAGAGACTGCATTTGAAATCAAATCATCAGTTTCCAGCAGGAGCATTTTTAAAGATAAGCAATCCTGTGACATTAAAATGGAAGGAATGGCAAGGAATGATCTCTGGTATTTGTCATTAGAAGAAGTCTGGAAATGTAGAGACCAGTTAGACAAGTATCAGGAAAACCCAGAGAGACATTTGAGGCAAGTGGCATTCACCCAAAAGAAAGTACTTACTCAGGAGAGAGTCTCTGAAAGTGGTAAATATGGGGGAAACTGTCTTCTTCCTGCTCAGCTAGTACTGAGAGAGTATTTCCATAAACGTGACTCACATACTAAAAGTTTAAAACATGATTTAGTTCTTAATGGTCATCAGGACAGTTGTGCAAGTAACAGTAATGAATGTGGTCAAACTTTCTGTCAAAACATTCACCTTATTCAGTTTGCAAGAACTCACACAGGTGATAAATCCTACAAATGCCCTGATAATGACAACTCTCTTACTCATGGTTCATCTCTTGGTATATCAAAGGGCATACATAGAGAGAAACCCTATGAATGTAAGGAATGTGGAAAATTCTTCAGCTGGCGCTCTAATCTTACTAGGCATCAGCTTATTCATACTGGAGAAAAACCCTATGAGTGTAAAGAATGTGGAAAGTCTTTCAGCCGGAGTTCTCACCTCATTGGACATCAAAAGACCCATACTGGTGAGGAACCCTATGAATGTAAAGAATGTGGAAAATCCTTCAGCTGGTTCTCTCACCTTGTTACTCATCAGAGAACTCATACAGGAGACAAACTGTACACATGTAATCAGTGTGGGAAATCTTTTGTTCATAGCTCTAGGCTTATTAGACACCAGAGGACACATACTGGAGAGAAACCCTATGAATGTCCTGAATGTGGGAAATCTTTCAGACAGAGCACACATCTCATTCTGCATCAGAGAACCCATGTGAGAGTGAGGCCCTATGAATGCAATGAATGTGGAAAGTCTTACAGCCAGAGATCTCACCTTGTTGTGCATCATAGAATTCACACTGGACTAAAACCTTTTGAGTGTAAGGATTGTGGAAAATGTTTTAGTCGAAGCTCTCACCTTTATTCACATCAAAGAACCCACACTGGAGAGAAACCATATGAGTGTCATGATTGTGGAAAATCTTTCAGCCAGAGTTCTGCCCTTATTGTGCATCAGAGGATACACACTGGAGAGAAACCATATGAATGCTGTCAGTGTGGGAAAGCCTTCATCCGGAAGAATGACCTCATTAAGCACCAGAGAATTCATGTTGGAGAAGAGACCTATAAATGTAATCAATGTGGCATTATCTTCAGCCAGAACTCTCCATTTATAGTTCATCAAATAGCTCACACTGGAGAGCAGTTCTTAACATGCAATCAATGTGGGACAGCGCTTGTTAATACCTCTAACCTTATTGGATACCAGACAAATCATATTAGAGAAAATGCTTACTAATAAATATGGGAATTTTTCACAAAGAGCAATGACTTTATTTTGCATTGGAGAACTCCTGGAGATAAGCTGTACAAATTGAATCTATGTGGAAATGCTTTCAGTCTTGTTACTATCCTATTGCACATTAGAGAATTGGTCCTGGAAGGGAAAGAAACCACAGATTTTATTTCAGTACACAAATCCATCAGATTTTCTTCTTTTCATGAATTCCTACAGAAGTAATTGGCCTGAGAGCATTCTTGACCAAGTCTTAAATGCTAGAATCTGAGAAGGAATTATTAAATAGGTGAGTTGTTGAGCGAGAACCCCTTCATTTGAAAAGAAATGAGTATGCTACTATAGGGAGAGTTGTTGCTGAGAATTAAGAAATGATACAGTTAATGCAACAAAAGATGGAAAATAATATTTCAGTCAATATGTCATTGTTTTCTTGACTATGTCTCTCTTCTGGGACATTTAGTAGTGTTTGGTATGTTTTATGTGTCTGGTAGAAACCATATTTTGGTTAACAGCAAGAAAAATGCTTATAATGTAGTACAATTAAAAACAACACATCTCCACTACCAGTGCTAACCCATTTTTAAGTACATTTGCATGTGGGCAAGAATTGAAAGTATACAGATAATTGAACAGAATTGATTTGTTAGATAAGGAGATTTTGACTGAGTTTTATAGTCTGTTTAATGTTGCTGTAATAATTATTTTAAGAAACTTTTAAATATTGTAAGAGGATATCTAGTTTCTCTATTCTACCATCAAAGAAGCTTTTGAGTACCACCTGTTAATGAGCTTTCCTATTCTAAATTGTTTTGGGTCACAGAGTTCCACTTTTTCCACTCTTATTAGCACTGCAAAAGCTCCTGAGAATTTAAAAACACAGTAATTCTCTGGATGTTAGGACCTAGGGGAACATTGGGCATTTGAACATATCAGGGAGGGTCCCCATTTTAGTGGGAACAAGTATTTAAACAATATTTAGAGCAAGTGTCCTCATGTGATAAACAGAGCACAGTCCAAAGATACCCTCTTTCTCAAGGTAGTCTTTTATCTTTATAAAGAAAGATTAGTGTTTAAGAGCGTAGACTTGAGCTAGACTACCCAGGTTGAAACCCCACTAGCTGGGTGATCTTGAACATGCTGCTTAGCTTCTCTGTGCCAAACTTACTGATATCCTCATCTGTAAATTAGCGATAATAATAGTACTTACCTGGTAGGATTATGGTGAGTATTAAATGAGTAAATGGAAACAGCTTAGAATAGTGCCTGACATATATTATGTTCTCTGTAGTTACTGGCTGTGATTATTAATAATATTGCCGCACCCTAATATCTGTTATTTAATTGAAATCTGCTTGTGTGCTTATAAGAATTTACTGAGTTCTCACTTCCCTTACAGTCATACATGGTTTTTCCCTTTTGCCTAAATCAGAACTCAACAGCCTGGGAAAATCACTGACAAATAGTGGATATAGGTTTCATTTCTGAGGATCAATAAACAGCTTGTAATGTTGTATACACATTTATTCTGTTTGTACAAAGGTTTTCCATTCTATGGAGAGGATCCCAGTCTTCAGATTCTCTGGTAAGTTAATAACCCACAAAAGATTCAGGAAGAGGATCTATTTTAATTTTCTCTTTCATTCTATAAATCAGTCTGTTGTATATAGGGACTGACCATGATTCTCCATTTTCTGGCATAAATATTAGCTGCTCAATGATTGATTGTTGAATGATAGATGAAGTATTGCTGAAGCCAACCAGAGATCTTGATCTCTCTCTGAGGAAAAAACCTAGAAATGATGGTTAGAATCAGGAGACTTGAGAACTACGAGGAACATGGCAGCCTCTAGCTCATACTTGTCGTTGTACAATTGAGATCAAGTGAATTGGCCCCGGTCTCACATTTTCAGTGAAGTCAGACTCAGAACTAGGTCCTGGGTTTCATGTTTCCTGCTGCTCTTCTCACTGTGTACACACCATGCCCACATACAACATACCTATCAGAAATGGTTTTCATTAAGGGAGTAGAATAGTCACTTAACTGGGGCTCTTAACATTGCTAATAACCTGTGGCTCAATTTCCTCAACTGTATAATGAGGTTACTACTAGTATCTACCTCAAAGCGTTGTCATGTGGATTGAGATGATATGTATGAATCACATAAAAGAGTGCCTGGCACATAGTAGGTGCCATTAATAATATTACTATTGTTAACACCTTAAGGGTCTAACTTGTAATGAAGACAGAAATATGTATGAGGATGATCACTGAAATATTTATGACAGTGCATAATTTGCAAAATAAAAAATGTACACTAGCATAATATTTGTGGCATATCCGTGTAATGGAAGATTATGCAGGCATTAAAATATGTACACAAAAAGTTTGGTAAAGGAAAAATGCTGTCATGTGTTACAAAAGCATGATAAATAATTGTTAATATGGAATAAGCTCAAATATGTCAAAATAAATGTAAAAAATGAGTGTTGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612-ZNF10:NM_015394:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF124393=GDE_N=FE(25.2=100)
A:
NA
C2:
PF124393=GDE_N=PD(44.1=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)