Special

MmuINT0178675 @ mm9

Intron Retention

Gene
ENSMUSG00000057101 | Zfp180
Description
zinc finger protein 180 [Source:MGI Symbol;Acc:MGI:1923701]
Coordinates
chr7:24886467-24892234:+
Coord C1 exon
chr7:24886467-24886587
Coord A exon
chr7:24886588-24889423
Coord C2 exon
chr7:24889424-24892234
Length
2836 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTTGCTGTACTGTCTCCCAGACT
3' ss Score
7.98
Exon sequences
Seq C1 exon
GAAAGCACAGACTTCAAGATTGTAACTGTGGACCTTACAGAGGAGGGACAGAGCATGTGGAACAATGCCCAGAGAACCCCAGAGAAAACCGTGATCCTGGAAGGCCACAGGGACCTGTGGG
Seq A exon
GTGAGTACTGAGCCACTCTAAACAAAGGACTATCTACCGATGCTTTCCTTTCCTGTTAAGTTGCGGGGCTCAGCAGCCAGATTTGCTTTTTTACCTTTGTTTTGTGTGCTCAGGAACACACCATAGCGTGCAGGGGAAGGAAGGTCAAAGGTCGACCTGCAGCACCCGCTCCCTGGCCATGCACCCCTGGAGTCTTTCTCCATGTTCTTGGAGATGCAGCCCAGGGGATTTATTCTGGTATTCTCAGAACAGACCTGGCCCCAGCACTGCTGCATGCCAGTCCTTTCTGTAGCTCTTAGAAATGTTGGGGGGTGTTCTGTAGCTCACGGCGCCCTCCCAGCTACCCTCACCACATTCCTGCAAGTGTTTCCTAGAAGTGTTGAGGCATTGCTAGCGACACTGGAAAGGCTGGGAGACCCCCAGAGCCTGAGTGAGGAACATGGGGAAACTTAGCAGCCTGGCTGCATTGGAAGGCCTGGGGACGTGGTGTTGGAGGCAGGCACAATGTGGTACTTGAAGATCTCGGCACACTGAGAGACCAGGCATTCCTATGCTCTTGCAGTCTGCTCTGCAGCCTTGCAGAATTTTTAACACAGGTGACTCTGCCCCACCCTGGGAATGAAAATTTATATAAAATGTAATTTATTGGGTTTGAGGTTGTTCAGTCTTCACAGATCCTAACAGCCAAAGCCTGAGACCAAACTGAGTGGTTTTTCTTCTGTCTCCAGCATAAATATCCAAAGTCCAGTCTCTCCTTCCAACAGCTTTCCAAACCACACAGTTCCCTTACTAACGCAAGGCAAAGGTTATAAACACTTTATCAGTGCACTTGTCCAGTTTTCATGTGACTTTTCCCAGGGAGGTGTACAGAAAAGTCTAGTCCCCTCAACAGTACGCCAACAGACACTTACATCCAAGGCCAGCTCGGTAAACGAGTAAGTTTACTAGATTACTGTAGGAACAGAGGTGACCTGAACGCAACTATATCTTCACCACACCCAGCATGGAGAAAACTTACAGAAGCCCAGGCCCCACTAAGGCCTCTCACTTTAATTTAGCACCTCTTCAAGACACGTATAGCTGGGGCAGTGACAGAACTCTAAGTGAGAGTCTGGTACTCTCCCCACCTCTCTGTTTTGCCAGAATGTAACAGCTGACTACCAGCACCATTGACCCCACTGTGGCTTTATCTTCATTAACTCACACCAGCACCGACCAACCCCACTGTAGCTGTATTTTCTCTGTTTCGTTACCCCTCATTAAGATGTAGGTGTTTTGGAAGCCATGAGAACTCAGTGTTGCACTGTACCCAGAGTGAGTCGCTCAGTTAGACCAGTCGAGAACCACATACATGGGGTCGTTACCTGTGCATAAGATCTGTTTGTAAGCCCCACTGGTAGTTGCTGTTTCCCCTGTCTACAGACTGTGTGGGTAATCACTTTTTCTACATGGGCTCGTTAAGCATTACCTGACAGTTACTTAGAAGCAGGTTGTGTACATACTTCTAATCTCTGTAGAGGAATCCTGAGTCCAGGGCACACCATTTGTTTGGAGAACTGGGACAACATTGAGTTTCTGTGCTCACAAATATTGCTGTGTTGATGACTTGTTGATGCACACTGTGCTAGTCAGTTTCATGCCTCCAGAACTTTCTAAGAAATGTAGCTACTAGCATTTCAGTGCACATAGCATTTCAGTGCACACGCGTCTAGCACTAACACGGACTAAAAGGTTCTTCATTTCCTCTTTTGGGGCTCTTTTCGTTTTTAGCACTTTTTGTTTTGTTCCTATTGATTTTAAATTTTTAAATTTGCTTGAGGTTCTAATGGTTCTGCATAAAGGTTATTTTTCCTGTGTGGATATATGTGTGGGCCTGAGTATGTGCACTATGAACAAGCAGATGCTACCAGGCAAAAGAGGATGTCATGTCACTTGAAATTAGAATTACAGACAGGTATAGTTCCCTAGTGTGTGGCCTCTGAAAGAGCAACCAGTGCTCTTAAACACGGAGTCATCTCTCCCAGCCCTGCATAGGTGATTTTTATCTTGAGACATGGAAGTCCATGACATTTAAAGTCTTGCTTATTTGAATAAAATTAAGATGCAGATAGTTTGAGTGGAAGATTCTGTTGTACCTTTGGGCTGTGGCACTTTGTTTCTTTGTTTTCTTTTTCTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCTGAGATCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCACCTGGCCAGGGATGTGGCACTTCTGAACTCTGCCCTCTCTCCTTTCATTTCTCAACCCAGGTTAGAGGTACACAAGTCAAAACATTTTCTCTAGTTTCTTGTAAGCTTTATCCCACTATCTAGCTCTAATGGGGGGCGGGGGCTGGAATGTTCAGGATGTTGTTGTGGTTTGGATATGGAGTATATCCCACAGGCTCATGTGTTAAATGCATGTTCTCTAGCAGGTGGCACTATTTTGGAAGGTTCTAGAAACAAGAATGTAAGTTTGGTTTGAAGAAAGGGGCCATTCCATCGGTGTGCCTTAGGTTAGTTATATCTGTGCTCTGATCATGCTCTGATTCTCGCTATCACAGATTGAACTTTCCACTCTCTCCGCTTGACATACTGTTCTGCACAAGCCCCTGGGGCTAAGGAATTCTAGTCTGAGCCTTCTAAGCCATATGCCAAAGGCAGTCTTTCTTCTGTAGACTTGTTACTGTTGGGCATTTGGTCATGGTATGATACGTGACTAATACGGGTGCCTTGCTGTACTGTCTCCCAG
Seq C2 exon
ACTTGCCAGCTGTACATGGAACAGAAGGAGCCACCGCAAAGCAGACAATCTTCAATGAAGAACCATCCCATGGATTGAAGCTAGAGGGGTCGGCAAGAGATGACCCTTGGCTGTCAACATGTGAAGAAGTCCGAGACTGTAAGGAGCAGTCGGGGAAACAACCGAACAAGCAAGAGGAGGTGGCCTTTACCCAGGGTAGCGCTGGCTCTCCTGATACTGTCTACAGGGGTCATGACCCTGACAGGAGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCCCTCAGAAACCATTTCCATAAACAGGCGTCACATGTTAAAAAGTTGCATGGTGATGTCGTTGCAAGCAGTCACCAAAAGATCAGTGATAGCTCAGATCTCCTTGAAGATGACACAGCTGGGGCAGTTCCTCAGAGCATCCGCCCCTCTCAGTTCGTAAGCAGCCCACAAGGAGAGGAAGCCTATGAACTTAATGGCCATGTTCAAGCTTCTGGCCGAGGTGCGCCCCGAAATCTAAATGAGAAAGTTCCTTTGGAAGGTAAAACCTTTGGCTTTAAAGGGCGCGGGCAAGTTTTAAACCATAGCGTGGTCCTCGGTGGGCAACAGGAGCTTCTTGTTAAAGAGGGCCAGGATAAATGTAAAACCGCCCCAAGTCCGTCTCTTCCTCAGAGCCTGAGAAACTACTCTGAGGAGAAGCGTTTTGAATGTAAGTACTGCGGCAAGTCCTTCAGCTGGAGCTCCCATCTCATTGCACACCAAAGAACCCACACAGGGGAAAAGCCCTACAAGTGCAACCTGTGTGGGAAGTTCTTCACCCGGAGCTCACATGTTGTTTCTCATCAGCGGATCCATACTGGAGAGAAACCGTACAGGTGCAATCTGTGTGGGAAGTCCTTTACCCAGAGATATGTTCTTGTGGTGCATCAGAGAACTCACACTGGCGAGAGGCCTTATGAGTGCACCCAGTGTGGGAAGTCGTTCCGCCAGAGCTACAAACTCATCGCACATCAAAGAACCCACACAGGGGAAAAGCCATACGAATGCACCCAGTGTGGGAAGTCGTTCATCCAGAGTTACAAGCTCATCGCGCACCAGAAAATTCATTCTGGAGAAAAACCCTATGAGTGCAGTCACTGTGGCAAGTCCTTCAGCCAAAGCTATAAACTTGTTGCACATCAGAGGACTCACACCGGCGAGAAGCCCTTCGAGTGTAATCACTGTGGGAAGTCGTTCAGCTGGAGCTCGCAGCTGGTGTCGCATCAGAGAACCCACACAGGAGAGAAACCTTACGAGTGTAATGAGTGTGGGAAGTCATTCAACCGGAGCTCACACCTTGTCATGCACCAGAGAACTCACACTGGGGAGAAGCCGTATCAGTGCAAGCAGTGCGGGAAATCCTTCAGTCAGAGCTACGTCCTCGTCGTTCATCAGAGGACGCACACTGGGGAAAAGCCCTACGAGTGCGGCCAGTGTGGGAAGACGTTCAGGCAGAGCTCCTGCTTTACTCAGCATCAGAGGACTCACACTGGAGAGAAGCCCTACGAGTGTAATCAGTGTGGGAAGACGTTCAGCCTAAGTGCCCGGCTTATCGTCCACCAGCGAACTCACACTGGGGAAAAGCCCTACAAGTGCGGCCAGTGTGGGAAAGCCTTTATTAGCAGTTCGAAGCGCAGTAGGCACCAGGCTACTCACAGTGAGGACGCCTGTAAGTCCTGACCAGTTGAGAGTCAGAGCTGATGTTGACTCCTGGACTGATCCAATCCTCTCAAGTTATGTGGGAAGGAATGCATTTGGCAGGAAGTGACAGTGTGAGAAGAATGCACATAGACCCTTTCCTTACCCCCATGTCGACGAAAGAAAGGAGTAAAGCCTTCAGTTTGGCAGATGTGGATAAGAGGTCTCCGGAGAAGAAAAACTGTTACACACGGGCTGGGGTGTGTTCTTGAATGACTGTGCAGGCGTCATCCCTAAGCCAAGCTCAGAAGGCCACTTCCTGACTGGCAGAAGTTGTTTCCCAAAGCACTTCGTACAGAGAAGGCAGAAGCTAGACTTAGAAAAACTGAATGTTAGATCAAATACTGCAAGTTTAGTGCAGAAGCCCTCTAGTTTGAGTTCTGGCCTGGTCTTTGAGAGCACAGCTTCTCTGTTGCAAAGCTGACACTCTGTAAATTTAGTTCAGGAGGTATGTGTTCTAAAATGCTCTTACTTAGGAAAGTAACTGCTGGCCATCAGCTTTGCTGTCCTGCCTCTGGCTCTTTTCCTTCATGCTACTAGGTGGCTGAGCCACGACCTCCCACCTCATCTCCCCATCAGAGTCTTCAGACCTACTCACTGCAGGCAGACGGGTCACTTAATCCCTCATTTATGCAGGCTTAACCAATCAGCTTCCAGTCATAGCCAAACGTAAGCTCACTTGGGAGTATCTTACTGCTCTTGAAAGAGCTGCTTTTCTATCTCAAAGCTTTGCTTGCTCTTCTGCTGTCCTCACTAGTCATTCCGTGCCATCAGGAGACAACATAGGAGCCACTGCCGCAGAGTGACGGGTGGCCATTGAGTTGTCAGGGCCCGAGTCCTCTAAACTAAGCTCATTCTCAGCCAAGGAATGGACTCCCTTGCCCTCAAAGCCCCCTACAGTGTTCCTGTGGATGCTGGCCATGAGCTGCCTGTTTCAGGAAATCCACAAGCAGGGTCAAGCTTGGACCAGCATGGAGGTAAGCCCATGCTAAAACCCCATCACTAGTGAGTGAAGCTAGAGGACCATTCAAGACCAGCCTGTGCTACATAGCAAGACTGTCTTGAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057101-Zfp180:NM_001045486:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.707 A=NA C2=0.344
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PU(94.9=90.2)

							
A:
NA

							
C2:
PF0135222=KRAB=PD(2.6=0.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000064611





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000132679
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:44478147-44479282 
LOW PSI
HsaINT0186331
(ZNF180)
Human
(hg19)
chr19:44982364-44983499 
LOW PSI
HsaINT0186331
(ZNF180)
Rat
(rn6)
chr1:80933373-80936735 
ALTERNATIVE
RnoINT0167816
(Zfp180)
Cow
(bosTau6)
chr18:52640588-52641931 
LOW PSI
BtaINT0164966
(ZNF180)
Chicken
(galGal4)
chr18:31475-31583 
ALTERNATIVE
GgaINT1030522
(ZNF302)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"