HsaINT0186331 @ hg19
Intron Retention
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:12970]
Coordinates
chr19:44979859-44983626:-
Coord C1 exon
chr19:44983500-44983626
Coord A exon
chr19:44982364-44983499
Coord C2 exon
chr19:44979859-44982363
Length
1136 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CTTATATTGCTTTCTTTCAGACT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GAAGGAGTGAACTTCAAAATTGTGACTGTGGACTTCACACGGGAGGAACAGGGTACTTGGAACCCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAGAACCACAGGGACCTAGTCTCTTGGG
Seq A exon
GTAAGAATACACTCCTCTTTAATGAAGATCCATCTACTGAAATGATTTCACATTCTGATCGATTAAGAACTGTGAAATTCAGCAGCCAGAATGATTTTGGCTGCATCTAGATTGTGTTTGTGCTCTTTATTCCCCAGTGAAGATTAATTTTAGTTTGTAGGGTAGAAATAGTGCAGATTCTTGGGCTTGAGATTTTCAGTCTTCATGTTCCTAAAGACCAAAGGCCAGGACCAGATTCTGCAGTAATTTTCTTTTGTCCCCAGCTTTGAAAACTCAAATTCCTGTATCTTTCCTTGTCAGCTTTTTGAAGCAGATACAATCTCCTAGTTGGAGCAAGGGAAAGAATATAAAAAGAATTTTCCAATACATGTGTTCAAGTGAGAACCAGACACATAGGGGTCATTACAGGTGTAGAAGGTCCATTTGAAAAAATCCGCATAGAAGATGCCACATTTTTTCTTCATTTCCCACCTCCTGGTGGACTGTATACATGACTACTTTTTCCATATATACTCTCTATTGCTTGACCTAGTAGCCACCCAGGCTACTAGGAGCAAACTTCTAGTCTCTCTCAGTTGGAATCACAGAAATTTGTGGGGCTTTATTGGTTCCTAAGGTAGTTAGGGAACTGGATAATAATGCCCCATTCCTTTTCTTTTGTTCACAAACATAGTTTCCTCATGCCTCACTGACACAGAGTAGAGTATTTAGCAAGTTTTATGCCTTCAGAAATTCCTGGATATGTAGACACTAATCTCTTAGTGAACATCTGTGTAGCACTAAAGAGTGGAAAAGACTCTCTATACATATTGCAAAATTGGGTTGCAATTCTGTAGGTTCTATGTAGATGATCTTATTTTGGAATATGCAGGTATTTGACATCCAGAGTCTTATTTATTCAGACTAAGATTAAACCAAGATTACAATAGTTCCATTTTAATGCTCTGTTGTAATATTGGGCTGTGGTAGTTCTGTACTTAATACTTTATCTCACCCTTTTGCTTTTTCAACCTAGGTTATCGGTCAGTATTTGAAAACAAATTCATATATATTTTTCATACTTTCTTGTTAGCTTTATTCCATTTTTCCATCTCTAATATTTTTTGACTAAGATGTCTTATATTGCTTTCTTTCAG
Seq C2 exon
ACTTGGCAACTGCAGTTGGAAAAAAAGATTCAACTTCAAAGCAGAGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAGATAGAAAGGTTTACAAGGGATGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGAGATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAAGCAGTTATTCATGAGAGAGTCTGCAAAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCCCAGTTATACCCATAAGAAACCATTTTCATAAACATGTATCACATGCTAAAAAATGGCATCTTAATGCTGCTGTAAACAGTCATCAGAAGATTAATGAGAATGAGACACTATATGAAAATAATGAATGTGGAAAACCCCCTCAGAGCATTCACCTTATTCAGTTTACAAGAACTCAAACAAAAGATAAATGCTATGGATTTAGTGACCGTATTCAATCTTTTTGCCATGGTACACCCCTACATATACATGAAAAAATTCATGGAGGAGGAAAAACCTTTGATTTTAAAGAATGTGGGCAGGTTTTGAACCCCAAAATATCCCATAATGAACAACAGAGAATTCCTTTTGAAGAGAGTCAATATAAATGTAGTGAAACCTCTCATAGTTCCTCCCTTACTCAAAACATGAGAAATAATTCTGAAGAGAAACCTTTTGAATGTAATCAGTGTGGGAAATCCTTCAGCTGGAGCTCGCATCTTGTTGCACATCAGAGAACTCACACAGGGGAGAAACCTTATGAATGTAGTGAATGTGGAAAATCCTTCAGCCGGAGCTCGCACCTTGTTTCCCATCAGAGAACTCATACTGGAGAGAAACCTTACAGGTGTAATCAATGTGGGAAATCCTTTAGCCAGAGTTATGTCCTTGTTGTGCATCAAAGAACTCATACTGGGGAGAAGCCTTATGAATGCAATCAATGTGGAAAGTCATTCAGGCAGAGCTATAAACTTATTGCACATCAAAGAACACATACCGGAGAGAAGCCCTATGAATGTAATCAATGTGGGAAATCATTTATCCAGAGCTATAAACTTATTGCACATCAAAGAATTCATACTGGGGAAAAACCCTATGAATGCAATCAGTGTGGGAAATCCTTTAGTCAAAGTTATAAACTTGTTGCTCATCAGAGAACTCACACAGGAGAAAAACCCTTTGAATGTAATCAGTGTGGGAAATCCTTCAGCTGGAGCTCTCAGCTTGTTGCACATCAAAGAACTCACACTGGAGAGAAACCGTATGAATGTAGTGAATGTGGAAAATCTTTTAACCGCAGTTCTCACCTTGTTATGCATCAGAGAATTCACACTGGGGAAAAACCGTATGAATGTAATCAGTGTGGGAAATCCTTCAGCCAGAGTTATGTTCTTGTTGTACATCAGAGAACTCATACTGGAGAAAAGCCCTATGAATGCAGTCAATGTGGGAAGTCCTTCAGACAGAGTTCATGCCTTACTCAACATCAGAGAACTCATACTGGAGAGAAACCATTTGAATGTAATCAGTGTGGAAAAACATTTAGCTTGAGTGCTCGACTTATTGTGCATCAAAGAACTCATACTGGAGAGAAACCCTTTACATGTATTCAGTGTGGAAAAGCTTTCATTAATAGCTATAAACTTATTAGGCATCAGGCAACTCATACTGAAGAGAAACTCTATGAATGTAACTAGTTTGTAAATCAGCTGGGATTTCTTCCTTTTTATTTCATTCTTTTAAAAAATTTATTTTAAGGTAGTACATGTAGTTGGAAGAACTACTATAAAAACAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGTTCTGGAAAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACAATGTTAAACTTGATTCTTATGACATATTCCTATGAAAATAATAAATACTGGCACTTTTCCTTGCAGAAAGCACTCAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTAAATGGAATGCTAACACTAGTGGGCTTATTGAGAAAATTTAAAGGTTGCTGTAGTGTTTAGAACTTAGGCTGGAAAACCATATTTTAGTGCATCATTTTACTACATGATCTTCCAATTAGATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATAAATTTTAGGAAAGTGTCTATGATATATAGTGAAAAGTGTGGGAAAAGAATATAGAAATAATATTCACTTCTAAAACCATTATGATAAAATATTTGTGTATGGATTAGAATAGAAAGGGATTATGGATGTATCTATTCAATTTCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGTAAAAATTATTCAAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384-ZNF180:NM_013256:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAACAGGGTACTTGGA
R:
CAGACCACTCTTCTCCCCAGT
Band lengths:
356-1492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)