RnoINT0167816 @ rn6
Intron Retention
Gene
ENSRNOG00000029336 | Zfp180
Description
zinc finger protein 180 [Source:RGD Symbol;Acc:631380]
Coordinates
chr1:80933249-80940040:+
Coord C1 exon
chr1:80933249-80933372
Coord A exon
chr1:80933373-80936735
Coord C2 exon
chr1:80936736-80940040
Length
3363 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTTGCTGAACTGTCTTCCAGATT
3' ss Score
8.55
Exon sequences
Seq C1 exon
GAGAGCACAGACTTCAAGATTGTGACTGTGGACCTCACGGAGGAGGGACAGAGCACTTGGAGCAAGGCCCAGAGAACCCCAGAGAGACCTGTGACCCTGGCAGGCCCTGGAAGGGACCTGTGGG
Seq A exon
GTGAGTACTGAGCTGAGGACTAGCGCTTTCCTTTCCTGTTAAGTCGTGGGGCTCAGCCGCCAGATTTACTTTTTTTTTTTTTTTCAGGTTTTAAAACTTTATTTGCATATTAAAAATTGTGTATTCCAATAATTAAAATTGTTTGAACAACAACAACAAAAAAAAGGCACTCTGATTGAACTGCGTTTTATATCCCGCAGGACATCGTGGGCCGTCTTTATTTTACTCCCTATTCCACCGTCTCCCACCCAGCCTTTTCCTTCACTAACATGCAAGTTCTTTTCCCCCTCTGCCAGCCAGGCCAGCGGATGGGCGGCGGAGGTGGGGGGGAGGCCTTCCTGGTCAGCAGTTATGCTTCTTTGATGTGGAAGGGGCAGCACAGTCATTTAAACTTGATCCAACCTCTTCACACCGCATGAAGTTAAACAGCAAAGGAAAGTAAAGTAAAAAGGCAACGCCTGTGGAATGTACAGTGCGTGTCAGCAGCGCTCGCCTCAGAGCTCGCCTCGTTACGACTCGCCAGCTTGCTTCTCTTATCCAATGGTTTCTTTTGAAGGCAGAGGATTTTTCTCTTGCGTTTCTGTCTTCCTCAGCTTCGACTTGCTGAATGTCTCGATCTCAGCCATATTGGGTTTGTCAGACATGGCTGCTGGAAGGAGCTGAGCGAGCTGGGCGAACAAGGAGAGTCCGATCTGCTCAGAGGCCACTGCCGACTCCAGATTTACTTTTTTAACCTTTGTTTCTTTTGTGTGCTCAGCACGAGGGTCAAAGGTCAGCCTGCAGCACTGGCTTCCTGGTCGTGTCCCAGGAGTCTTTCTCCATGTTCTTGGAGATGCTGCCCAGAGAATTTATTCTGGTATTCTCAGACCAGACCTGGACCTGGCAGTCCTGCATGTCAGTCCTTTCTGCAGCCCCTGGAAAGGTTCGGAGGTGTTCTGTAGCTCACAGCACCCTCCCAGTTACCCTCACTGCACTCCTGCAAGTGTCTCCTTGAAGTGTTGAGGGATTGCTGGCAACGATGGAAAGCTGGGAGACCCTGAGGAACACGGGGAAGCTTTCAGCTGGGCTGCACTGGAAGGCCTGGGGACTTGGTGTTCGGGGCAGGCACAGTGTGGCACTTGGAGATCTGGAAGCACTGGCAGGCCAAGCATTCATTCCTATGCTCTTGCGGTCTGTTCTGCAGCCTTGCAGAGTTTTTAACACAGGTGACCCTGCCCCACCCTGGGAACTCAAATTTATATAAAATATAACTTGTTGGGTTTGCACTTGTTCAGTCTTCACAGATCCTAACAACGGCCAAAGCCTGGGACCAACCTCTGTGATTTTTCTTCTTTCTCTAGCATAAATATCCAAAGTCCAGTCAGTCTCTCCTTCCATCAGCGCACCAACTACACAGTCCCTTCCTAAAGCAAGGGACATACAGAATTTATCAGTGCATCTTCCAGTTCTCATGGGACTTCGGAGGGAGACGTACAGAAATGTCTGTCCCCTCCATGGTCCTCCCACAACACTTACTTACTTCCAAGCTTGGTCAACGAGTGCATTTACTAGGTTACTGTAGGAACAGAGGTGACATGAGGCAAATGGACCTTTAAAAAGCCACATACCCAGCATGGAGAAAACTTAGAGAAGCCCAGGCCCCACTAAAGCCTTCTCCCTCTGCTCTAGCTCCTCTTCAAGACACGGGTAGTGGGGGCAGGAGGACTTGGTGACTGGACTCTAAGTGAGAGTCTAGTGACTGTCCCACCTCTCTGTTGGAATGTAGCCAGCTCACACCAGCACCGACTCCACTGTGTCTGTGTCTTCACTGTTTCATTGTCCACCCTACAGAGGTAGGTGTTCCAGAAGCCATGACAACTGTCATTCATCATGCAGTGTTGCACGGTACCCACAGTGAGTAGCTCACTTACACCAGTCGAGAGCCACACACACAGCCATTACATGTACGTGAGATCTGTTTGCAGACCCTCTGGTGTGTCCCCTGTCTTACAGACTGTGTGGGTGACCACTTTCCCACATGGGCTCTAAAGTATTACCGAACAGTTACTCAGAAGCAGGCCGTGTACAAAGCACTAATCTCGGTAGACGTCACAGGAATCCAGAGTCCATAGCCCATCAGGAGTTTGGAGAACTGGGGTGACATTGCCCATCCTGAGTTACTGCGTCACAATGTACTGTGTTAATGACTTGTTGATGCACACTGGCTAGTCAGTTTCCGGCCTCCAGAGCTTTCTAAGAAGTGTAGCCACCAGCTGTGGTGAACATGTGTCCAGCACTAACACAAATTGAAGGTTCTTTATGTCTTCTTTTGGGGCTTTTTTTGTTTTTAGCACTTTTTGCTTTATTCCTATTTGTTAATTTGCTTGAGGCTTTATAGGTTCTGCATAAAGATTTATTATTTTTACCTTGTGGGTGTATGTGTGGGCTTGAGAATGCGCACCATAAACATGCAGATGCCACCAGGCAGGAGGCTGTTGTGTCTCCTGGAAATTGGAGTTACAGACAGATATGAGCTCCCTAGTGTATGTTCTGAAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCCGCTCCTGCACGGGTGACTTTATCTTGAGATACGTAAGTCCATGACTGTTAAAGTCTTGTTTATTTAGATAAAATTAAGATGCAAATAGATTGAGTTGAAGACTGTTTCACCTTTGGGCTGTGGCACTTGGTTTCTTTGTTTCGTTTTCTGTTTTGAGACAGGGTGTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACTAGGCTGGCCTCAAACTCATAGAGATCCGCCTGCCTCTGCCTCCACCACCTGGCCAGGGATGTGGCACTCTGAGCTCACTGCCCTCTCTTTCATTTCTCCATCCAGGTTAGAGGTACGTAAGTCAAAACAGTTTCTGTAGTCCTTGTAAGCTTTATCCTTCTATCTAGCCCTAACTTTCTTGGGGCCTGGACTTCAAAGGATGTTGTTGTGGTCTGGCTATAAAGCATATCCCACATGCTCATGTGTTAAATGTATGTTCTCCAGCAGGCGGCACTGTTTTGGAAGGTTCTAGAAACCATAATGTAGGGTGTTGTTTGAAGAAAGGGGCTGTTTTGTTGGTGTGCCTTAGGTTATATCTGCACTCTGATCATTCTCTGATTCCTAGCTATCACAGGAACCCTTTCCACTCACTCCCCTTGACATGATGTTCTGCACAAGGCCCTGGGGCTAAGGAATTATAGTCTGAACCTTCTGAGTCATATGCCAAAGTCAGTCTTCCTTCTGAAGGCTTGTTACTGTTGGGCATTGGTTATGGTGTGATAAAAGTGACTAATACAGGTGTCTTGCTGAACTGTCTTCCAG
Seq C2 exon
ATTCGACAGCTGTACACAGAACAGAAGAAACAACCTCAAAGCAGACCGTCTTTGATGAAGAACCATCCCATGGATCGAAGCCAGAGGTGTTGGCAAGAGATGATCCTTGGCTTTCTTCATGTGAGGAGCAGTTGGAGAAACAACAGGACAAGCAAGAGGAGGGGGTCTTGACCCAGGGTAGTGCTGGTCCTCCCGAGACTGTCTATGGGGATCCTGGCTTTGACAGGAGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCTCTCAGAAACCATTTTCATAAACAAGCGTCACATGTTAAAAAGTTACATGGTGATGTTGCAAATAGTCACCAACAGATCAACAACAATGCGGATTTCTTTGAAGATGACAAATCTGGGAAAGTTCCTCAGAGTCTTCATCCCACTCAGTGTATAAGAACCCCGAAAGGAAAGAAAGCCTGTGAATTTAATGGTCGTGTTCAACCCTTTGGCCAAGGTGTGCCCCTAAATCTAAATCAAAAAGTTCATTTGGAAGGTAAAAGCTTTGGCTTTAAAGGGCGCGGGCAAGTTTTGAACCGTAACATAGTCCTCAATGAGCAACAGAAGCTTCTCATTAAAGAAGGCCAGTATAAATGTAGCAAAACCGCCCCAAGTCCGTCTCTTCCCCAAAACCTGAGAAACTACTCTGAGGAGAAACGCTTTGAATGTAAGTACTGTGGCAAGTCCTTCAGCTGGAGCTCCCATCTCATTGCTCACCAAAGAACCCATACGGGGGAAAAGCCGTACAAATGCAACCTGTGTGGGAAGTTCTTCACCCGGAGCTCACACGTCGTTTCTCATCAGAGGATTCATACTGGAGAGAAACCATACAGGTGCAATCTGTGTGGGAAGTCTTTCACCCAGAGGTATGTGCTCGTGGTGCATCAAAGAACTCACACTGGCGAGCGTCCTTATGAATGCAACCAGTGTGGGAAGTCGTTCCGCCAGAGCTACAAACTCATTGCGCATCAAAGAACCCACACAGGAGAGAAGCCGTACGAATGCACCCAGTGTGGGAAGTCATTCATCCAGAGTTACAAGCTCATCGCGCATCAGAAAATTCACTCTGGAGAAAAACCTTATGAGTGCAGTCACTGTGGCAAGTCCTTCAGCCAAAGCTATAAGCTTGTTGCCCATCAGAGGACTCACACAGGAGAGAAACCCTTCGAGTGTAACTACTGTGGGAAATCATTCAGCTGGAGCTCCCAGCTGGTGTCTCATCAAAGAACCCACACGGGAGAGAAGCCTTACGAGTGTAACGAGTGTGGGAAATCATTCAATCGCAGCTCACACCTTGTCATGCACCAGAGAACTCATACTGGAGAGAAGCCGTATCAGTGCAAGCAGTGCGGGAAATCTTTCAGTCAGAGTTACGTTCTTGTCGTTCACCAGAGGACACACACTGGGGAAAAGCCCTACGAGTGTGGCCAGTGTGGGAAGACATTCCGGCAGAGCTCCTGCTTTACCCAGCATCAGAGGACTCACACCGGAGAGAAGCCCTATGAGTGTAATCAGTGTGGGAAGACCTTCAGCCTAAGTGCCCGGCTTATCGTCCACCAGCGAACCCACACTGGGGAAAAGCCCTACAAATGCAGCCAGTGTGGCAAAGCCTTTATTAGCAGTTCTAAGCGCAGTAGGCACCAGGCTACTCACAGCGAGGAGTCCTGCAAGTCCTGACCAGTTGAGAGTCTGAGCTGGAGTTGACTCCTGTCAGTCCAATCCTCTGAAGTTCCGTCTGAAGGAATGCACTTGACCAGAAGTGTCAGTGTGAGAAGAATGCACACAGGCCTTTCCTCACCCCGTGTCAGTGACAGAAAGGAGTAAGTAAGGCCTTCGGTTTGGCAGATGTGGATAAGAGGTCCCTGTAGAAGAAAAGCTGTTACACCCTGGCAGTGGCGCGTACTAGGATGACTGCAGGCATCGTCCCTAAGCCAATCTCAAAAGGCCACCTTTAACTGTCAGAAATCGTTTCCCAAAGCACTCTGTGTACAGAGAAGGCAGAAGCTAGACTTAGAAAAACTGAATGCTAGATCAAATACTGCAAGCTTAGTGCAGAAGCCCTCTTGTTGGTGAGTTCGGCCTGGTCCTTGAGAGCACAGCTTCTCTGTTGCAAAGCTGGCACCCTGTAGATTTCGTTCAGGAGGTGTGCATTCTAAATGCTCTTACTTAGGGAAGTTAACTGCTGGCCAGCAGCTTTGCTCTCCTCCTGCTGGCTCTTTTCCTTCATGCTACTAGGTGGCTAAGCCACGACCTCCCGCCTTATCCCCCCGTGCAGAGTCCTCATACCTACTCACTTCAGGCAGGTGAGCCATTCGATCCCTCATTTATGCAGGCTTAACCAGTCAGGTTCCAGTCATAGCCAAACGTAAGCTCACTTCGGAGTACCCTACTGCTCTTCAAAGGAGCTGCTTTTCTATCGCAAAGATTTCTCTTATGCTGTCCTTACTAGTCATTCCGTGCCATCAGGAGACAACATAGGAGTCACTGCCTTAGAGTGACAGGTGGCCATTGAGTTGTCGGGGCCCTAGTCTGCTAAACCAAGCTCATCTGAGCCAAGGAATGGACTCCCTTGTCCTCAAAGCCCCCTACAGTATTGCTGTGGATGCTGGCCATGAGCTGGAAGGGTCAGGAAATCCACAAGCAGGGTTAAGCTTGGACCAGCATGGAGGTGAACCTGTGCTAAAAACCCATGACTAGTGAGGCTGAGTCAAGAGGCTTGTTCAAGCCAGCCTGTGTTACATAGCAAAACTGTCTTGAAAGAAAGAGAAAGAAAAAGAAAGAAAACAAACTCGTCCTATGTGTACTCCTACATACATACTAAACGTTCGTTCTTTTCCCTGAAGAAAGAAAGCACTCAGATCCTAGTCTCAGAGAACCTAATTCGAAAACCAATGGCCTTTCCTAAGAGACTTACGTCAACCGTTGACTGGCGGATGTGCTGTGGTGACTCAACTTAGACCTTACGTTGGATCAGGGTATTTGACCATGTCAGTCTGCCTAGTTGCCCTGATTGGTAGTTTGTTACTTGTTTTATACACTTCTGTTAAATGTGAAGATTTTCTACAACTAAGGCAAATGGCCAGTGGAAATCAAACACATGTCAAGAGCATAGAAACTCTGGAACCTCCTTGAGAAAGTGTTTATGTATAGTGTGAAGTTGAAAAGGGATACTAAGCTATTTATTGATACCGTTGTTTATTTGTTATCTCTCCGAGATGCATGTTGTGCTATATAACATGGTACAAGGAATAAAAATTTATCTGAAGCAAAAAAGTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029336:ENSRNOT00000026077:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=73.8)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]