MmuINT1035519 @ mm10
Intron Retention
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20441329-20442265:-
Coord C1 exon
chr9:20442180-20442265
Coord A exon
chr9:20441456-20442179
Coord C2 exon
chr9:20441329-20441455
Length
724 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GCATTTTTGTGACGGTTTAGGAT
3' ss Score
7.01
Exon sequences
Seq C1 exon
AATTGGAAAAGCAACTACAAACCAAAGATTTAGCACCAGAGCAGGATTTTTTGACAAGACACACCTTCATGGAGACACAGCAGGTG
Seq A exon
GTGAGTTCAAGGAAAAGGATATTTTTTTATTTTATGCACTTAGCCAAGATTGACTTTTTTTTTTTTTAATTAGAAGTCATGGAGAGAACTGGGTTTTTCAGTAGAAGGAACAATCTCTTATATACTTCAGAAGATGAGTATTAAGAGGATCCAAAATTAAAGTGAAACTGACCAAGAAGGCACATTTTCTCATGTAGACTTGCCCTCACAGCAAAACAAAACAGCAAACCAAAATTCCTTGCCATGACTGATTTTTTTTTTCCAGTTGAATTGCTCCAGAAAGGCTTGTGTCTTACTTACACTGGTGAGGAAGTCCCCTAAAGATCATCTCAGGATTTTAGTAACCATTGGTATTAATTTCTGTTAGTGATTTTGTGTTCTGACAAATGGTAAAGATGAAAGTCTTCATTTTTAAAAGAAGTAAACTTATTTTTAATCACATAACAAGTTTGAAATATGCTTGGGAATGTGCCACAACATAGGGGGTACGATAGAGTTCCTTGTATAGTGATGTAAGCTTATTTGCAAGAGGTGCAGAAATTCATGAATATAGAAGGTCTATTGAGTGACTGTGGATAGAGGAATGCTCTAGGAGTACTGAGACCTGAGGAGATAGATTATGGGGACTTAGTCTCTTTTAAAGGGAAGGATGTCACTTCCTCATTCTCCAGTGAGCATAGGTGATGTTTACTTTGCTCAAGCTGGCATTTTTGTGACGGTTTAG
Seq C2 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAGTGGACCTCACTGGACCCAGTTCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108:ENSMUST00000159569:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGCAACTACAAACCAAAGA
R:
CTACTGTGGCCAGGTTCTG
Band lengths:
210-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types