RnoINT0167910 @ rn6
Intron Retention
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21454204-21455167:-
Coord C1 exon
chr8:21455082-21455167
Coord A exon
chr8:21454331-21455081
Coord C2 exon
chr8:21454204-21454330
Length
751 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCATTTGTGTGATGGTTCAGGAT
3' ss Score
6.46
Exon sequences
Seq C1 exon
AATTGGAAAAGCAACTACAAACCAAAGATTCAGCACCAGAGCAGGATTTTCTGGCGAGACACACCTTCATGGAGACACAGCAGGTG
Seq A exon
GTAAGTTCAAGGAAAAGAATATTCCTTATTTATGCACTTAGCCAAGATTGGCAGGTTTGTTTGTTTGTTTGTTTATTTTTTAGTAAAGTCATGTGGAGAACTGGGTTTTTCAGTAGAAGGAACAGTCTCTTAGTGCAGAAGATGAGTACTAAGGGGATCCAAAGTTAAAGTGCAGCTGACCAAGAAGCACCTTTTCTCCTGAGTAGACTTACCCTCACAGCAAAACAAAGCAGCAAACCAAAATTCCTCGCCATGACTGACTTTTCTAGTTGAATTTCTTCAGAAAGGCATGTGTCTTACATTGGTGAGGGATTCCCCTGAAAACCATCTTAGCGCTTTAGTAATCATCGACCGGTCTTAATTTCTGTTAGTGATTAAGTATTTATTATTTTGTGTTCTGACAAATGGTAAAGATGAAAATCTTCATTTTAAAAGAAGTAAACTTAATTTATAATCACATAACAAGTTTGAAATATACTTGGAAATGTGCCATAAGATAGGGGGTAAGATAAATAGAGTTCCTTATGCAGTTAAGGTAATGTAAGTTTATTCGCAAAAGGTGCAGCAATCCGTGAGTTCTGCAGGTCTACAGAGTGACTGGATAGAGAGATGCTCTAGGGATATTGAGACCTGAGATAGGTATGATGGGGAACCTTAGTCTCTCTTATAGGCACAGGTGTTATCTCCTCGTTCTCCAGTGAGCGCAGGTGATATTTACTTTGCTTAAGCTGGCATTTGTGTGATGGTTCAG
Seq C2 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAATGGACTTCCCTGGATCCAATTCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937:ENSRNOT00000038084:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGCAACTACAAACCAAAGA
R:
CTACTGTGGCCAGGTTCTG
Band lengths:
210-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]