MmuINT1035525 @ mm10
Intron Retention
Gene
ENSMUSG00000062040 | Zfp27
Description
zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]
Coordinates
chr7:29893333-29898878:-
Coord C1 exon
chr7:29898752-29898878
Coord A exon
chr7:29896427-29898751
Coord C2 exon
chr7:29893333-29896426
Length
2325 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTTCTCATATTTCATTCTAGAAG
3' ss Score
8.61
Exon sequences
Seq C1 exon
GAATTAGTGTCCTTCATGGATGTGACTATAGATTTCAGCAGAGAGGAGTGGCAGCATCTAGATCCTGCTCAAAGGAGTCTCTATCGGGATGTGGTGCAGGAGACCTACAGTCACCTGCGCTCAGTGG
Seq A exon
GTAAGCATAGTCCCCTGGTATCAGACAGGAAGCCTCACTCAGCTTATTCTATTCTCAGTTGGATGTCTGCTCCAAGGCATCTTAAGAGGCTTTTAAAGTTTATTTCGTGTGTGTTTGTGCGCATATGCATGTGTGTCTTTCTCTAGTGTGTGTTCACCATTAAGGTGCAGTATCCATGGAGGCCAGAAGAGGGCATCAGATCCCCTAGAACTGTATTTACAGGCAGTTGTGAGTGCCCAATGTGGATGCTATGAACCAAACCTTCAAGTTGAGAGTAAATGCTCGTAACTGCTGTGTGTCTCTACAGCCCTGTCTGTGAGCAGGGTTCTTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTTTATAGCCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCGCCCGGTTAAGCAGGCTTCTTTATCTCCTTTGTGCATTATAAATATCCTCATATAAATATTTTCTCTTGCTCTTTGTGCATTATTAAAAAACTCATATAAATATGAGTCTTTAGACCTATGTGGTTCCTTCAGAACCAACTCTCACTGAAGTGGGCCTACGACTGGGCCCTGAAGCATGAGTAGTTGGGCCCAGTCCTTTATCATTTTCCATGGACGGGATATCAAGTTTCCAAGACAGAGGTTTTCATACTGGGGCAAGAAAAGGAAACATGGGCATTACAGAATGAGAGTCCATGCCAGCACTGTGGGACACAAGAGATCTTCAGCAAAGCCGCTGTCTTCTTGGCTTTAGATTTGTGTCTTTTTTTTTTTTTTTAACTTTTTTTCTTCACTTTCCCCATGGCTTTAGTCTTTATTTATACACACAGGTATTTATAAATCTTTCCTTCATAATTACTTTGTGATATACAAACCCATACTCCCATACACCTCTTTCCTCCTTTCCCTGTGAGATAGTTCAGCTCTGCCCCAGCTAGCTCTCTTCCTGCTGTTTTCCTGGCCACTGCATGAGATTTGTCATTGCTTCCAGCTTCTTGTACCTTTCCTTGAGCTTATGACCTGAGTATCCTTGTCACTTAACCTCTGGCAGTATCTGTCTGCTGCGTTTGACACTTTTAAAATTTTTATTTATTTATTTATTTTGGCTTTTTGAGACAGGGTTTCTCTGTATAGCCCAGGCTGTCCTGGAACTCAGTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCTGGCTTTTTTTTTGGGGGGGGGGGACACTTTTTTTAAAAGCTCTATTTATATGTGTGTGTATTTATGTATATATGTATGTATGTATATATCTATGTGAGTACACTGTCACTGTCTTCAGACACACCAGAAGAGGACATTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAACTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACCGCTGAGCCATCTCTTCAGCCCCATGTTTGACATTCTTAATCATCTTTTATAAAGGTTAATTTTAATCCTGCCCAAGTGAGTCCACATTTGACAGAGTCTGTCTTTCTGGTTAGCTGAGTTTTGTTCTTGTTGTTATTTTATTACTGTACTTTACTGATGAGGCCTTCATTTAATTATAATTAAATTTATAATTATAAATGTATATCTTTTATATATTATATAAATGTAAATACATACATTTTAATTCTAATTCTGTCTTGGACTTATGATAAGGTGTTATGTTTCCCCTTTTCCCCTCTTTGGTTCACATCCTCTTCTCTCCCCACCGTGGATCACTGATTTACATAATGGAGACGTCCAAAAACCATCTGTATTAGAAAGTTTAAAATAAATTAGAGCCATGTAACAGTTTATAGGCATGTCAGCTTTCTCTGTAGCTCTTCTTTTTGCTTTACTTTGCTCATGCCTGCCTTATGTAATGTATCTACCTGGATGTATTTTATGCCTGGATGTTTCTTGTGCCTTACAATTTTCTTCCTCAAATTGCCCCCCTCCCCTCTTCTCTGTGTTTGTCCTGGGTGGGCCATGTGTGCTCTGACAGACACCTTGCTGTGCTGTTTCTCCTTTACAAAGGAACTTGGCTTTAGAGCTGGGAGTTCTGAAAAAGCCTTTTTACATATCAAGTGAGAAGGTAGTTTTGCTCTTGCTTTGTTTTGTTTTGTTTTTTACAAATGACGTTTTCTCATATTTCATTCTAG
Seq C2 exon
AAGAACTACAGCAGATTGGTGACCAGAAAAAGACCTACCAGCAAATAGGACATAAATCAGCGAGTGATATGGTTTTCATCACGAAGACGCTGGGTGCAGAGAGTTGCCATGACTACTCAGGCGTTAGGAAGGTGATTCATGTGAACTCATACATTGTTCTCCCTCCCAAGAGGCCACGTCACTGGGACCCACCTGAGGATGAGCCGAAGCATAGTTCAGATTTACAGACTCATGATGAAAGTAATGGGCTGAAGAGAACTAAAAGGATTACTGAATATGGTAAAATTTCATCCTGTATCAACACTGAACATATTCTAACAGGAGAGAAATTACCGGACCATAATCAATGTGGAAAAGTCCTCGGTTATAAACAAATACCTTGTCAATATCAGAAAATTCATACTGGGGAGAAATCATATGAATGTGCTGAATTTGGAAAGATTTTTACCCAGAAGTCACAGCTCAGAGTACACGTGACGTCTCCTACAGGAGAAAAACTCTACGTGTGCGTCGAATGTGGGAAGGCATGTTCTCAGACGTCAGAGTTCCTCACACATCAAAAAACCCACACCAGGGAGAAGCCCTATAAATGCGGTGACTGTGGAAAGTCCTTTTTCCAAGTATCTTCTCTGTTCAGGCACCGGAGGATCCACACTGGAGAAAAGCTCTACGACTGTAGCCATTGTGGGAAAGGCTTCTCTTACAACTCAGACCTCAGGATACATCAGAAGATCCATACAGGAGAGAAACGCCATGGCTGCGTCGACTGTGGCAAAGCCTTCACACAAAAGTCCACACTGAGGATGCACCAGAAGATCCACACGGGCGAGAGGGCCTATGTCTGTATTGAGTGTGGACAGGCTTTTATCCAGAAGACACACCTGGTCGCACACCGAAGAATTCACACTGGAGAGAAGCCATACGCGTGTGACGGCTGTGGCAAAGCCTTCCTTTCCAAGTCCCAACTCCTGGTCCACCAGCGAATTCACTCAAGAGTGAGGCCCTGTGTATCTCTCGACCGTGCGAAACCCTTCAGCAGCGCTCCCAACCTCCTTCCGCGTAAGAAAGTTCAAATGAGAGAGAAATCGTCCATCTGCGCGGAGTGTGGGAAGGCCTTTACCTACAGGTCGGAGCTAATCATTCATCAGAGAACTCACACGGGAGAGAAGCCTTATCAGTGCGGGGACTGTGGCAAAGCCTTCACCCAGAAGTCAGCCCTCACCGTGCACCGAAGAATCCACACGGGGGAGAAGTCGTATGTGTGTGTGAAGTGCGGGCTAGCCTTCGTGCAAAGGGCACACTTGGATGCACACCAGGTGATTCACACTGGAGAAAAACCTTACCAGTGTGGTCATTGTGGGAAATTCTTCACTTCCAAGTCGCAACTCCACGTGCACAAGCGGATTCACACGGGGGAAAAACCCTATGTGTGCAGTAACTGTGGGAAGGCCTTTGCCAACAGGTCAAATCTCATCACACATCAGAAAACTCATACAGGGGAGAAAGCCTATGTCTGTGCAAGGTGTGGGAAAGCATTCACTCAGAGGTCAGACCTGGTTACACACCAGAGGATACATACCGGAGAGAAGCCATATGGGTGTAGCACCTGCGGGAAAGCCTTTACCCAGAAATCACACCTCAGTATACACGAGAAGATTCACACCGGAGAGAGACAGTACGGATGCCGAGACTGTGGGAAAGCCTTCAACCAGAAATCCATACTCATCGTGCACCAGAAAATCCACACGGGGGAGAAACCGCACGTGTGTGCCGAGTGCGGGCGAGCTTTCATCCGCAAGTCCAACTTCATCACCCATCAGCGCATCCATACTGGCGAGAAACCTTATGGATGCACCGACTGCGGCAAGTCCTTTACCTCCAAGTCGCAGCTCCTGGTGCACCGGCCAATCCACACCGGCGAGAAACCTTACGTGTGTGCCGAGTGTGGGAAAGCCTTTAGCGGCAGGTCAAATCTCAGCAAGCACCAGAAGACTCACACTGGGGAGAAGCCGTACGCGTGTTCAGAGTGTGGGAAGTCCTTCAGGCAGAAGTCAGAGCTGATTACACACCACAGAATCCACACTGGGGAGAAGCCGTACGATTGCGGCGACTGCGGGAAATCCTTCACTAAGAAATCCCAGCTCCAAGTGCATCAGCGAATTCACACAGGAGAGAAGCCGTACAGATGTGCCGAGTGCGGGAAGGCCTTCACCGATAGGTCCAATTTGAATAAACATCAAACAACACACACCGGAGAGAAACCTTATAAGTGTGTAGTCTGTGGGAAAGGCTTTGTGCAGAAGTCAGTGCTCAGCATTCATGAGAATGTTCACACCTCGGCAGTATGAGAAAGGACCCATTGAGGACACGTCTTATGTAATTACTGTCTCTATAGGACAGAATAATATGTATATTATTGTAAGTAAAAATGCCACATGACAGTGTCACACATTACTGCTCAGAAAAAGATCTCAGAGAAGGCACTGAATGGGATTATGGGGCAGGACATTTCTACTTGCTGAGAAGAAATTGCATCAATTTGACACAATAGAAGCGTTCTCATGGTAAAAAACACAGTGGAACATTGTCATCAAGTTCTTCACAAGAAAGATTGTGTCAACTCATGTTGATGCAAAAATCCTGTTGGTGGAGTATGTCTACTGCCAACTAATTACATGGTAATCTAATCTAATATAATGTACATGACAGGGACCATCTTCTCTTCTGTCACTTGTTTGCTGCAAACATTAATAGACCTGTGGGTGTGTTTGCATTCTTGGTCAGATCTAACATAACTGGCACATCCAATCCTTCTGTTGAGAGACATACACTACAGGCCTGGGTGTGGCATTTCGTGCCAGTAATTCCAGCCTTTGGGGAAAGCTGAGGCAGGAGGATTACCATGAGTTCAAGACTAGTCTGAGCTACAGGGTAAGACACTGTCTCAAAAACAAGAGAAGGCCACAGTAAAGACATAGCCTAACACGAACTTGAAAGTGTACCTGGCCTTCCTGTCATTTACACCAGGACATGTCACAGACTTTATAAGCTACCAGTGCTATCTTTGTAAAAAGACCAACATGTCTCCTACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062040:ENSMUST00000162592:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types