MmuINT1035660 @ mm10
Intron Retention
Gene
ENSMUSG00000066880 | Zfp617
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:71922852-71928328:+
Coord C1 exon
chr8:71922852-71922972
Coord A exon
chr8:71922973-71928201
Coord C2 exon
chr8:71928202-71928328
Length
5229 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ACATATGTGGTTTGTTTTAGGAG
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCTGGCGCTTCCCTCCTCACAGCTCTCAGCTGAGGAAGTCCAAGTTGCTGAGCCTCCGCGGCCGTGTGAGTGCCTGTTCCGGAGCCTCTGTGGAGCCGCGGCAGGCCTGGGCACAGACATG
Seq A exon
GTGAGCCAGGCGAGTGGCGGGGCTGTGCGCGGCGCCCTTGGTCCCGGGCGGCGGGATCCCGGTGCTGCGCCGGGGGACGAAGGGCGGCTGCGCACTGTCGCCTGCGGCTCCAGAAAAGCTGCTTTTCCCCTTAGGGAAAGTCAGTCGAAAGCGGGATTCCGAGGCTGGATGATGTGGAGCCGAGCTGGAAGTTTAGGAGACAATTCTTGCGAGTGAGAATTTACGCCCCGCCATGCACGGAGGCCAGGGGAGGTCACCCGGTGTCCTGCTTTGTCACGGCCCGCCTTATTCCTGTGAGACAGGGTTTCTTACTGAACCTGTGGCTAGGCTGCCTGCTAGCAAGCTCCAGCGATCCTCCGGGCTCTGTCCCCATGCCTGGCATTTACTTGGGTGTTTTTTATTTGAACTCGGGTTCTCACCCTTGCTCAGCGAGCACTCTTACACACCGAGTTATCTCTCCAGGCCCGAGAAACATGTCTAATATAGATCTTAAGCGCAGAGATTAATGGAAGTGAACCTGGGAAAACTGAGACATACCGAGATGTGAGGGAACTTCTCAGGGGACAGTCACAGTTCTTTTCCATGGGTACATGCGGCTCCCGCATTTAGGATTGTAATATCCTCTTGGTAGATTATCCCTTTATAGAGTATGACGAGACTATCTTTATCCCTTCTGACTTAAGGTCGGAGGAAGAACTTTTCAATTTTCGTCATCTCTGTGAGTATGGTACTTGAGGGTTTTCAAGTTTATCTTTTACTCTTGGGTTAAATACTGCTCTTACCTCTGCTCCTTTTTCCAGTAATAAAAGTTTTTTTGGAAACGACTGGACTTTAAGTCGTGGTCAAGTTCAAATCATAGTGAATTGCAAACGTATCGGTTTCTTTGTTTTGGATTTTTTTTGTTGTTTTGCTTTGTTGTTTGTTTGTTTTTGTTTTGTTTGAGACTAGATCTTACATATCCTAGGCTGTTGATAAACTTAGTTTACAGCCAAGCTTGACTTTGAGTTTCTGATAGTCTTATGACTACCTTCCAAGTGCTGGGATTCTATGAGCACATCACTAGCTCCTGGTTTTGCAGCTCTGAAATTTAAACCCAGGGCCTCATGCATTCTAGACAAGTATCTACCGTATACCAACTGAGCTACAGTCTCAACTCTATATCAAATTTTATTCCTGAGTAACTTTTCTGTGATCAGCACTTAATATTATTTAATTGACTGAACTTTGTCCTCATGGTATATAGTGGGATCCACTTAGTATTTATTTGACTATTAATTATCAAGTGGCTATGTCTTTCTTTACATGTGGTTTAAATGTTTTAGTAATTTTTCCATCTTTACTGATGTGATGGTTTAGTTTATACTGAGCACACTCATCTTTCTCGATTCTTGTATTGCAGATATTTTCCTTCTATTTTATTGTCTTTGCACCCCATTAATTGATATTTTTCAATTTGTCAAGACATTTAATTACTTCTTTCCTCCTTTCAAATAAAGAATTTTACATTAAAATTGTATAAATCATAGGGCTCGCTCCCTCCCTCCCTCTTTTCATAGGCACTACAGGAACCCAAACCAGATGTGCATAACTAGTCAGGTATAAAACCAAGCTCCCCTTACAAACACACTAGAATAAGAACTTCCCTGAGGGATAGGAAACAGTTATGTTCTCAGGGAAATTGAAGATCCTGGATGCTTCCAGTTGAAAGAGTTGAAAACCTGCCCATTGTGGTGGCATATGCTTTTTTAGTCCCAGCTCTGCAGGCAGAAACAGGCAGATCTCTGTCATTTGCAGACTTGCCCTGTCTATGTAGCGTTCCAGGCCAAGACTACATAGTAAGGTTGCTTCTGAAAAGAGAGAATAAGGGTTGAACACTGGGAGCTGAGTGCAGGATGACTTATATAGCTGTCCTCTGTGTGGGCTGTGACTACCCAGGACAGGGGAATGTTGATACAACAATCTGTCTTGATGCTACTGCTTGTCCATACCTCAGTAATAAACAGAATAAAAGTCATTCATATGACAACGGGGAAGATAGAGTGAAGGTGGTAATCTGAAGTAGGCAACAGTCCTGCTCTGGTTTGGTGTGATTGTCCATATACTTGCTCTTTAATTTACTGAACTCCCACATTGGTCCCTTCTAGTAATTTTTTTTTTTGTACCAGAAAAGTAAACATTTGGAGTCAAACTCACTTTTTCTTTTCTTTTTCTATTTTTCACATATGTAAATATATGCTTGCTTGAGAAAGCCCACTTTTACACCCTCTTCATTAAAGCGGGTCTTTAAGTAAGGGCTCACTGAAATGGATAGTGGTGCTAGGTAGCTTGCTTGCTTTAGAGACCTTGTGTCTCCAACTTCCTAGGCTGTAATTACAAGCAGGCCATTGTACCTACCCATCATTTACTGGGTCTCAGAGATCTAAACTGACAAGCACTTAACTGCTAAGCCATCTGCCCAGACAAACATTTGGAATTTTTTAGCATGCTGGGTGCCTTCTAGGATGACTGGATTCTTGGAGATTCCAATATGGTACAGATATTGGACCCCACACACCTGGAAACACTGAAATTCATGCATTGATTCTGGTCACAGGTACTATGGAAGAGAAGCATCCCACATGTAGTACCTTCAGCACTTCAAGTGACATTCCAAGCATTCCTACAAATCAAGGAAAAATTCACATAGTCGACAGTGTTCAATACAGAAAGGGAAGCAGCAGGTGGGAAATATCACATATTTACCCTCTAGGAGTGAGTTCTATAAAGGATAAAGGACCTCAGACTAGGATTGGGCCTTCATTGGGCAGAGTATTAGAAAGGAACAAGTACATTATGATGGGAGTGGGGGTCAGAAAAGAGAGCCTTCAGAGAAAACCCTTAATAAAGGAAACTATGGCTTTTCTATCCTGTTGGTGTAGCAGTAATCCCTACACCATGTGATTCAATTTAAGATAGCCTACTAACAATACGGAATGTCCAGGTAATGATTGGGGCTATAAATTAGAGGCTGTGTACCACACCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCATATTGTAGAAAGGAGAAAATAGAGAGGCCAGCCATGGCCACGTGGAGAGAGGGGAGAAGGGAGAGAAAGAGAGAAGGAGGGATAGAGAGTAGGTAAGGTGAGGGCTTAATGACAACAAAACAGCTTCTTAACACTGTCCTGGGGGAAAGCTAGATGAGGGTGGCCTGATGTCTTTAGGCTGTGGGATCTGGACTCTTAAAATAACTAGTATCTTAAAGGGACATGATGAATATAAGAGGCTAACAATAGCCAGATACCCATGGATATTCTTCTCTAGCTCTACCCCAAGTCCTCTTTGTATCTCTTGCATTTGTTTTTTCTTTTCTGTAGACGTTTCTTCCCATCTCATCATTGCTGTTCCTGATGTCACAGGGTTCACTAACCCCAAAAGAGCTTCCTGTGCAGTAACCTGAGAAGCTTCTAAGTCACAAAGATTTACTTCCTGCTGAACAGAATTGGCCATACACACACACACACACACACACACACACACACACACACACACACACACACATATCCTGCATGCCAGAAGAGGGCAACAGATCTCATAATAGATAGTTCTGAATATCCATGTAGTTCCTGGGAGTTGTACTTAGGACCTCTGGATGAGCAGCACGTGCTCTTAACCTCTGAGTCATCGCTCCAGCCCTGGCCACAGTTTTCTTGACCCATGTAGACTTCATGACTGCCAAATCTAGCATAATCCACCAAGGATACATCATGGCCTTTCCTCTCTTAAGTGTGGAAATTATATCTGGGAGAGATTACACTAGCCGGCCAGAACTGCAGTCAGGCCAGAGGCAGCTCCTAAAGCCACAGGCCAGCTCCATCCAGCTTTGTTGCCATCTTACACACCCCCTGCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTACCTTCCCTACCTTCCCTACCTTCCCTACCTTCCCTACCTTCCCTACATTCCCTACCCTCACCTCACTGGCTTGCTCTTTCCAGGAGAGAGATCACTACAAAGCTTTGACTAGTTTGAAATTCCCTATGTAGACCATGACTTTGAACTCACATAGTCAGCCTGCCTCTGCCTCCCACCTTCTGGGATTAAAGACATTTAGTATCACAACTTGTTTTTTATTATAAAAAAATTCTCTGTTGTGTCCTAAAGACTTGACTGACTTTTCAAAGCTTAGAGTTTTATTGTTTTCACTTAATTATACAGTGAGTTGGTTACTAAACATGAAACATAGATGAATGTAATACAGTATCCAATTAGATATCAGTTTGTTGTTGACCTACATAAAAAGTTTTGTTGAGGTCTGCCAGCATTCAGCAGTAACTGTTCTCTCATCAGTCTGCTTCGTGTATGTGTGCTGTATAACTCAGCATCCACTGTGTTAGAAAGTCTTCTTAGAAATTCTTCTCTGCTATGTTTTAAAATATGCATTTTAATGATAATTACTCTATTGTGCTATAGAACACTTTCTTTAATTTTATGTATCATTTATTTTGAACTTTTGGATATTGTTCATACTTCCAAATGTTGCTTTTTAGTGTAATCACAGAAAATGTATATTTTTCAGGGAACATGTTGTTTCAACGGGTGTAAAGATGTATCTATAGAAGAAACTCATTAAAGACATGTCCCAGGGAGATTGGAAGACTGTCTTTACTGAGCATCTAAAACTAGTACTAACATTCAGAGCAGATGCTAGTAAAGCAAATACAAGAAGTGTTTTGGCAAAACAAGCTCCTCTTGGCAGTTAAAGTGATGAGGCCTGTCATCTAGACACAAGTGAAAGAGATGGTACATGCAATGAAAACTTAGGGGTGACTCAGCAACTTATCACAAGTCACCAGATGTCATTCATTGTTCTGTTAGTTCTTCAATACAGTATTCAAGTCTAGCACCAAAAAAGTTGTTTGATAAGGGAGAATAACTTAACAATCAACTCACAAAATAAATGTCAGGCATTCCCAGCATCATGAGCATTTCCTATGAATTGAGTATGGGTCCTGAATGCTGCCAGTTTCACCTTGCTCCTGAAAACATATGTGGTTTGTTTTAG
Seq C2 exon
GAGTCAGTGACTTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGACTTTGCTGAATCCTTCACAGGAAAATCTTTACAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880:ENSMUST00000119003:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types