MmuINT1035787 @ mm10
Intron Retention
Gene
ENSMUSG00000062931 | Zfp938
Description
zinc finger protein 938 [Source:MGI Symbol;Acc:MGI:3621440]
Coordinates
chr10:82224850-82227591:-
Coord C1 exon
chr10:82227531-82227591
Coord A exon
chr10:82226594-82227530
Coord C2 exon
chr10:82224850-82226593
Length
937 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTTATTCTTCTTTTAATAGGTA
3' ss Score
10.19
Exon sequences
Seq C1 exon
GCTATGATTGGGAAGACAACAATAGTGAAGAATGTTGTCAAAGTTCTAGAAGACATGGAAG
Seq A exon
GTAATTTTCATGTGGAAGCTGGTACATAATGTACCTCTGAAGATATTTATAATGTACCCTGAAGTTTTAATGAAGAAAAAAATAATGTAAGCACAGTTTTGTGAGGAGTTTTAAATTCTTAAACACTGTCTTAGGGTTTCTATTCCTGTACAAAACATCACTACCAAGAAGCAAGTTGGGGAGGAAGGGGTTTATTCGTCTTACACTTCCACACTGCTGTTCATCACCAAAGGAAGTCAGGACTAGAACTCAAGCAGGTCAAGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGCTGTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACTAACAAGGGGCCTTCCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGGTGGATCTCATGGAGGCATTTCCTCACCTGAAGCTCCTTTCTCTGTGATAACCCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTACACATACTATACAGTTCAATCTCAGGTAGCTAATTAGTAGCCCAATAAGAAACAAGAGAAGGAACCAAGGCCTTAGAAGATGTCACAGTTTTAATCATAGCCTCATAAGAACCCTTTTGTATAAGTGTCTATCTACTTAATTTTATTCCATTGAAATATCATAAATGACATACACATTGATTAGGGTACTAGTGTATGTCCAAGACCTGTTACAAATGAATCACAGGAAAGCTAGTGTTACTCATATACTTTAGTGACTTAGTGTAGTTTAGTAGACAGCAGTTTATAAGAGTTAAGAAGATTGTTGTGGTGTCGAAACTTGAATCCCTATACCATGCATCTACGAGGAACAGAGCATTAACTAAACTGTATGAATACAACATGAAAATCTTTTATTTGTTATTCTTCTTTTAATAG
Seq C2 exon
GTATTTCAACTCTTCTCAATATAGTACATATAAAGCAAAGGGCTATGGAAAGAAGCAGTGCACCTCTCTCTTTCCCAGAACAATTAGAAGATATGTAGTCATCCCCACTATGAGAAGACATGGTGAATGTGATATAAGTTTACAAGTAAATGGTTTTCCAGCTTCAATGGGAATTCATCAAAATACTCCCATTGGAGAAAAGCCTTATGAATACAAGGAGTATGGAAAATCTCCTGTCCGTCCTGGTTTACTTTGCATATGTAGTGTGACTCACACTATAGGAAAATGTTATGAATGCGATCAGTGTGGTAAAGATCTCAGTTCTTCTTTTTCTCTTCAAAGGTGTAAAATAAGTCATGTAGGAAAAGAGCATGATGGATGTGAGCCAAGCAGTAAAAGTTTTAACTATCACAGGTATCTTCAAATACAGAACACAACCTACAATGAAGAGTATCTCTATGATTATATTCAATGTGATAAGGCCTCTTTACAATTACACCAAAGAACTAGTTCCACAATAACATCCTATGATTATAATGAAGGAGATAAAGACATTACATTTCACAGTAATCATCAGATATGTAGGATGAATACTAGAGACACAAGGTATGAATATCATCAATGTGGTAAAACCTTTGCATGTCCTAATTACCTTCAAATACATGAAAGAATTCATACTAGAAAGAAACCCTATGAATGTAATCAGTGTGGTAAATTTTTTGCATATAAAAGTCATTTTCACAAGCATCAAAGAACTCACACTGGTGAGAAACCCTATGAATGCAGTCAGTGTGGTAAAGCCTTTGCATGTAATGGTAATCTTCAAATACATGAGAGAATTCATACTGGTGAGCAACCCTATAAGTGTCATCAATGTGGGAAAGCCTTTGCATATAGCAATAGTCTTCACAAGCATGAAAGAACGCACACTGGAGAGAAACCCTATGAATGTAATCATTGTGGTAAAGCCTTTACATGTCACAGTACCCGGCAAATACATGAAAGAATTCATACTGGAGAGAAACCATATAAATGCAGTCAATGTGGTAAAACCTTTGCACGTAACAGCCATGTTAAAATGCATGAAAGAATTCATACTGGAGAGAAACCCTATAAATGCAATCAATGTGGTAAAGCCTTTGCATATCACAGTCATCTTCAAAGGCATGAAAGGATTCATACTGGAGAGAAGCCTTATGAATGTAATCAATGTGGTAAAGCCTTTGCATATCGCAGTAGTCTTAGACTACATGAAACAAGTCATACTGGAGAGAAACCTTATGAATGTAACCAATGTGGTAAAACCTTTGCCTGTTCCAGCTATCTTCAAATACATGAAAGAATTCATACTGGAGAGAAACCCTTTCAATGTAAGCATTGTAGTAAAACCTTTTCATATCGCAGTAGTCTTCACATGCATGAAAAAAATCATACTGGAGAGAAACTCTTTGAATGTAAGAAATGTGGTATATCCTTTGCACATCTTGGTACCCTTCAAAAGCATGAAAAAAAGCATACAGACAAAGAAGAAAATTCCCCTGAAGGATAGTAAATGAGATATAGTATTTCAAACCATATTCATTCTCTCCACTAAGTTCTCTCATTGGTTTTTGAGTAACAGTACAACTATTACATCATTAAAATGTTGTCTCCTTTTCAAACTGCAAACATGTTGTCATCTAAGAATAACGGAACCCATTGTCTCATGACAATTTAAATAGTAAAATCTATATGTAAATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062931:ENSMUST00000041264:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAGTTCTAGAAGACATGGA
R:
AGATCTTTACCACACTGATCGCA
Band lengths:
344-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types