RnoINT0081675 @ rn6
Intron Retention
Gene
ENSRNOG00000033583 | LOC100910577
Description
zinc finger protein 709-like [Source:RGD Symbol;Acc:6497573]
Coordinates
chr7:9898314-9900432:+
Coord C1 exon
chr7:9898314-9898374
Coord A exon
chr7:9898375-9898883
Coord C2 exon
chr7:9898884-9900432
Length
509 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTTGTTCTTCTTTTAATAGGTA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GCTATGAATGGGAAGACCACAATAGTGAAGAATGTTGTCAAGGTTCTAGAAGTCATGGAAG
Seq A exon
GTAATTTTGATGTGGAAACTGATACATAATGTACCTCTAAAGAAATTTATAATGTACCCTGAAGTTTTAATGAAGAAAAAGTAATGTAACTAAGCATAGCTTTGTGGGATTTTTAAAATCTCATATGCCATACAGTTCAATCACAGGAAGCTAATCAGTAGCCATGTAAGAAACACAAGAAGGACCCAAAGCCTTAGAAGATGACACAATTTCAATCAGAGCCTCATAAGAACCCTTTAATTTTACTCCACTGAAATATCATAAAGGACATACACATTGATTAGTGTATATCCAAGACCTTTTACAAATGAATCATTCATAATAAAGCTAGTGTTGCTCATACACTTGTAGTAACTTACTGTAGTTTAGTTAGATCAGCAGTTTATAAGAGTTAAGAAGATAATTGTGGAGAAACTTGAATCCCTATAGCATATGTCTATGAGGAACAGAGCATTAAACTGTGTGAATGCAACATAAGCATTTTTTATTTGTTGTTCTTCTTTTAATAG
Seq C2 exon
GTATTTCAACTGTCCTCAATATAGTACATGTAAAGCAAAGGGTTATGGGAAGAAGCAGTATACTTCTCTCTTTCCCAGAACAATTAGAAGATGTGATATCATCCCCACTGTGAGAAGACAAGGTGAATGGGACACAAGTTTACAAGTAATTGGTTTTCCAGCTTCAGTGGGAATACATCAAAATACTGACGTTGGAGAAAAGCCTTATGCGTACAAGGAATGTGGAAAATCTTCTCTCTGTCCTGGTTTACTTTGCATATGTAGTATAACTCAGACTGTAGGAAAATGTTATGAATACAATCAGTGTGGGAAAGCACTCAGTTCTTCTTTTTCTCTTCAAAGATGTAAAACAGCTCACCTGGCAAAAGGAAGTAATGGATGTGAGCCAAGTAGTAAAAGCTTTAACCATCATAGGTATCTTAAAATACAGAGCACAACCTACAATGAAAAGGATCTCTATGATGGTATTCAATGTGATAAAGCCTCTTTACAATTACACCAAAAAACTAATTCCAAAATAACACCCTATGAATATAATGAAGGAGATAAATTCATCACATTTCACCGTCATCATCACATATGTAGAATGAACACTAGAGACACAAAGTATGAATATCACCAATGTGGTAAATCCTTTGCATGTCCTAGTTACCTTCAAATACATGAAAGAATTCATACTAGAAAGAAACCCTATGAATGTGATCAGTGTGGTAAATTTTTTGCATATAAAAGTCATTTTCACAAGCATCAAAGAACTCATACTGGAGAGAAACCCTATGAATGTGGTCAATGTGGTAAAGCCTTTTCATGTAATGGTAATCTTCAAATACATGAAAGAATTCATACTGGCGAGCAACCCTATAAATGTAATCAATGTGGTAAAGCCTTTGCATATAGCAATAGTCTTCACAAGCATGAAAGAACTCACACTGGAGAGAAACCGTATGAATGTAATCATTGTGGTAAAGCCTTTACATGTCACAGTACCCTGCAAATACATGAGAGAATTCATACTGGAGAGAAACCATATAAATGCAGTCAATGTGGTAAAACTTTTGCACGTAACAGCCATGTTAAAATGCATGAAAGAATTCATACTGGAGAGAAGCCCTATAAATGTAATCAATGTGGTAAAGCCTTTGCATATCATAGTCATCTTCAAAGGCATGAAAGAACTCACACTGGAGAAAAACCTTATGAATGTAATCAATGTGGTAAAGCCTTTGCATATCGCAGTAGTCTTAGACTACATGAAACAAGTCATACTGGAGAGAAACCATATGAATGTAAGCAATGTGGTAAAACCTTTGCCTGTTCCAGCTATCTTCAAATACATTTAAGAATTCATAGTGGAGAGAAACCCTTTCAATGTAAGCATTGTTGTAAAACCTTTTCATATCGCAGTAGTCTTCACATGCATGAAAAAAATCATACTGGAGAGAAACCCTTTGAATGTAAGGAATGTGGTATATCTTTTGCATATCTTGGTACTCTTCAAAAGCATGAAAGAATACATACTGACAAAAAAGAAAATTTCCCAGAAGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033583:ENSRNOT00000042498:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF079757=C1_4=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGGTTCTAGAAGTCATGGA
R:
ACTGAGTGCTTTCCCACACTG
Band lengths:
348-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]