MmuINT1035788 @ mm10
Intron Retention
Gene
ENSMUSG00000074282 | Zfp94
Description
zinc finger protein 94 [Source:MGI Symbol;Acc:MGI:107610]
Coordinates
chr7:24309071-24312495:-
Coord C1 exon
chr7:24312382-24312495
Coord A exon
chr7:24309198-24312381
Coord C2 exon
chr7:24309071-24309197
Length
3184 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
ACATGTGCTTGCTGTCACAGGAG
3' ss Score
7.85
Exon sequences
Seq C1 exon
AAGCAGCAGAGAGACAAGGCTTGGGATGTTGGCTCTGGGGTGAGGCTGGGTTCAGGAACCCCACCTGCCTCTGCTTTCACCTGCGCGTGGGTGCAACAGCTGCCATCTTTGTTG
Seq A exon
GTAAGAATGCCCTAAAACACCAGGTACCTCACCGAGGGAGTTGCCTGCGCATGCTCATTTGCTTCCCATCATAATCTTGGGACCGACGTTCTATCTCTGTCCTTTTTATAGCCAAGGATGCTCACAGCAGCTTAGGTGTTGGGACCGAGGCCACACAGTAGCTTCTCCTTTGCAGGGATGTGTGAGGAACCTTCGTGGGGCAGTGTGCTAGCATGCATGTGCTACTCGGGTCCCGGTGTGCCAAACACTAGCACATTTCTAGCCCTTATAATGACTTTTGAGATAGGGTCTCACTGTGTGATCCAGGCCAACTTGAACTGAAAGCAATCCTCCTGCTTCAGTCGCTCCTGAATGCTAGAATTGCAGGTGTGTGACATCCTACCAAGCTCTTGTTTCTGTCCAGCAGTGATAACTCCTGTAGTCTGTTAATTCTAATTACATTGATTATAATGATGTGATTACCTGCATCTCACAGAGGCAGAGACTTTATTCCGTTTTCTCTGTATCTACGGGTAGTCTTTCATGGCTCTCCTCTTAGCTGGACGGGTTTGCAGACCTTATGTCTTTGGAAGCTGGCCACCCACGCAGCCTGCTTTTTAGAGTGCTGACGTGAGCACCATTTTCTACTGTCCCAGGGTGAAAGGCAGATTCAGAGACAAGAGAAGGGTGACTGCTGGAAGCACAACGGTTGTGTGTGTAGCTGGGCAGGTCGCTCTTGGCCAGGTGCTGGCAGCTGCTGGGGTGCATGGTGTTTGAGTCAGCCTCCCTGAGGAAGGAACACAGTGGCCATCTACTGAAGGCAGCCACTGCGCTGCTCATACCCTGGCCGGGCTCTCATGGTTTTTTTCTTTCCACTTCTTTCACTGTGCCTTCTTAAGACCCAGCCATCCCCCAGGAGGACAATGACCAAGGTCAAGGTGAGTTGGGCTGTTGGTCTCTCTTCCGTTTGCTGGCTCACTTGTTGAGTGGATGTGGCTGTCTAGAGGCACACTTATGCCACAGCCTGGCGTGCATGTGGAGCTCAGAGGACACCATGTGAATCTCTCCCCTCCACCCTCAGTTTACAAGGCTTTGTGGCAAGCACCTTCACCCCTGAGCTATCTCACTGGCCTTAAATTCTCATCTCTTTTTTCAGAGCCAGTGGCTCTCAATCTTCCTTTTAATACAGCTCCTAATGTTGTGGTAACCCCAAACCATAAAGTTACTTCCATTACTGCTTCATAAGTAATATTTTGCCACTGCTATGAACTGTAGTGTAAATGTCTGGTATACAGGATATCTGGTATGTGACCACTGTGAAAGGGTTGTTCAACCCCCAGAGGGCTCGCGTCCCACAGGTTGAGAACCACAGCTCAAAGGTTCTACTTCTCTCCTTGCTTCTTAGGAAGTATTAAGGAGAATTGTTCACATTTGAGAAATTCTTGGGTGCCAGATGTTAACCACCCCTGTTTTCATTATTTTTATCACTTTATAATTGGATGAATGAAGCAATAAAAACAAGGGCTCTGGAGATGGCTGATGCTTCAGAGCATCCACTACGCTTCCAGAGGACCCACGTTTGGATCCCAACACCTACATCAGGTGGCTCAACCTACCTGATCAGTGACCAGCCTGTCACTCCAGCTCCAGGGAAGCTGTCACCCTCTTGTGGCCTCTCAGGACACTAGCACTCACATATAGATACACAGCCACACACACATACAGGTAGTGAAAAATAGTAAAGATTTTAAAAAATAATAAAAATGCTGAGCATTTTTAATCCCAGCACCTGGAAAGCAGAGGCAAGTGGATGTGTGTGAGTTCAAGGCCAGCCTGGTTTACATAGTGAGTTCCAGGACTGTCAAAGAGAAACCCTGTCTTAAAAAAACAATAGCAAAATACTAACTACTATTACTGCTACTACATATGATTGGGTGAACAGGCACAGACGAGAAAAGCCCATGACGCCATCGTCCAGGTTGGGACTCTCTGCTATACACAAAGTTAGAGAAGAAAGAGCGGGAGAATATTTACCATACGGATGCTAAGGAATGGAAGTACGGGGCCGACAATTAGCTTAGGCAGAACACTTGCCTCGATTGTTCAGCGCACTGGCTTTGGTCCCCAGCAGTGCAGAACCAACACTTAGGAGAAAGGTAGGCAGAGTACCAAAGAGAAACAAACATGGGACTAGGGACATAGCTTAACCGGTAGAGTGCTTGCCTTGCACGCAAGAGGCCCCAGGTTCAGTTCCCAGCACCACATACTCCAGTCTTGACACCACATCCTTGTGACCCCAGCACTGAGGAAATGGAGGCAGGAAGATTAGAGAAGTGCAGGTCATCCTTGGCTACACAGCAAGTTTGAGCTAGCCTAAGCTATGAGACCCTGTCTAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAATAAACATGGTTAGTAAATAGTTGAAAAATGTATTATTTTAGTGATCACAAAATAAATAGAAATATCAAATTGTCTTTCACTGATTTAAACAGCATTTTTTTTTTCCCCACATTTACTTTGAGCATGTGAGCATACTCAAAGAACAACCCATAGGAGTCGATCCTCTTCTTCCATCATGTGGTTCCCAGGATTTGAACTTGGGATGGCTGGCTTAGCAGCAAACTCCTTCACCCACTGAGTGCCTGTTACTAGTACAAATTTTTGTTATGGGTTGTTCAGTGTTGTCAATGGCATGAAGAACCAAGAATTCTTATGTTCATTTTGGGGAAAGCATACTGATAGCAAAAAAAGGAGGAGGAGGAGAAGGAAGAGGAGGAAGAAAAAATAGTTACCTCAGGCATTATAAATTAAAAATTGCATATTTGTTGACATTGCATTTTTAACATATAAGAATAGGGACTTTATGTAAAAAGTGGTCCTTCTGTGATTTCTCTTTTTTGTTTTATGTTTTTAAGACAGGGTTCCATCCTGTCCTGGAACTCAATATGGCTTCAAACTGACAAGTCACCCTCCTGTCCAGGCCTCCCACATGCTGGAATTACAAGCCTTGTATAGGGGGTTATATGGTCCAGTTTATGACGTGCTGGGGGTGGGACCCAGGGCTTTGTGGATGCCAAGCAGGTACCCCATGGCCCAAGCCCCAGCCCAGCCACAGCTACCCTCTGTTGAGAGACTTAGGTGACATGTGCTTGCTGTCACAG
Seq C2 exon
GAGATGGTGACCTTCAGGGACGTGGCCGTGGTCTTCAGTGAGGAGGAGCTGGGGCTGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074282:ENSMUST00000032673:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
ENSMUST00000108436fB20041
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types