MmuINT1035821 @ mm10
Intron Retention
Gene
ENSMUSG00000078546 | Zfp995
Description
zinc finger protein 995 [Source:MGI Symbol;Acc:MGI:1917331]
Coordinates
chr17:21879570-21882084:-
Coord C1 exon
chr17:21881958-21882084
Coord A exon
chr17:21881095-21881957
Coord C2 exon
chr17:21879570-21881094
Length
863 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AAATGCATTTTTTTTTTCAGAGA
3' ss Score
8.17
Exon sequences
Seq C1 exon
ACTCAGATAACATTCAAGGATGTGGCTGTGGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGTTGGAGAATTATAACAATCTATTTTTTGTGG
Seq A exon
GTAAGAATATTTTTGTAGAATTCCTGACTCATTCTTTGAATTTACCTACTATTGGCTTATATAAACCCTCTGACATATCTAAAGACTCCCAGAATAAAGGAAATCCTGGTTACCAACAGAAGGTCTTCATTGCTTTTCCTTTACATTTCTCTTCATTCTTTGGAAGAGGATCCAGTATTATATTCTGTGTAATCTCTCAAAACATAGTATCTACTTTTAATCAAAACTTCAAAATATAAAAACCACTGAATAGTCAGAGCAAGAAAATATATTGCTACAACTGTAGTAATTTTACTGTTTCATTAAAGTCTTCAGTTGTTTATGAATTTTTAAAATCAGGAAAGTTCTAAATAGAGAAAGAGCTGTTGCTTGTGTGAATTTTGTTGTTACTTATTTATTTAGTTTTTGACTTGTGGTTTCTATGTTTAGTCCTGGTACAGCATGGCTTTTACATCATGAGTTCCATGCCAATGTGGATTACATAATGAATTCCTAGCTGACCCAAGCTATACTTTGTTACTCGATCACAAAACATAAACAAGAAAATAGAGAAACTTTCTTTACATGGTCATTCAGGGAGGTCCATTCTCAAAGTCCTTTACTTCTACATCACCTATTCTTTTTACTTTCTGCCAAGCATAGTGGTAAATAAGAAATAGAAGGCTATTGTTTCCTGTCATTTGATGCATGAATTTTGAGATTGTTCTAAGTATCCATGTAATGATTGTGAAACAAGAAAGTCCACTTTTGAGAGTTCCATCCTTGAGAATCACTAATTTACATTAGAAAACTTCAGGAAACATGACATTTTGTCTTACTCATCCACTAATCCCTGTCATCTCTAAATGCATTTTTTTTTTCAG
Seq C2 exon
AGAATCATTGCATGTGTCCTAAATTTGAGGACATGTTGGATCAAGACCTACAGCATATTGTCCACGAGCATGTAAATATCCAAGTGAAATCTTATGAATGTCATGAGCTTGGCAAAATCATTCATGAATCCACTGAAAGTACACCTTCTAAAACTAACCTCAGGGCTACATCTGTTGAATCATCAAACCTAAGCAGACATGAAACTGAAAACAACAGATTAACTTGCAAATATAAAAACCATGCAAACTGTTTAAATTTGTGCTCTACCATTAGTCTAAATCAAGGAATCAACATAGGAAAGAAAGAATACAATGGTACAAAGCTTGATAAGGTTTTTGAATCTAAAGAAGTCCTCATGTTGAAACAAACCAAAAGTGGAAAGAAACCTTACAAATGTAGTGAATGTGCCAAATGTTTTGCCCAGAAATGCTGGTTTAGAAAACATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATCCTTTACGCAAAAAGGCAGTCTTAGTATTCATCAGATGTATCATACAGGCAAGGAACCTTACAAATGTAGTGAATGTTCCAAATGTTTTGCCCAGAAATGCTGGTTTAGAAAACATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGGCAAATCCTTTACCCAAAAAGGCAGTCTTAGTATTCATCAGATGTATCATACAGGCAAGAAACCTTACAAATGTAGTGAATGTGAGAAATGTTTTATTCAAGTTGGTGATCTTAGAAGACATGAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAATGAATGTGACAAATGCTTTAGGTACAAAAGCAGCCTTAGAAGTCATCAGAGAATTCATACAGGAGAGAAGCCTTACAAATGTAGTGAATGTGAAAAATACTTTTCCCACAAAGGCAGTCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAGTGTGACAAATTCTTTACCCAAAAAGGCAGTCTTAATGTCCACCAGAGAGTTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTTCCTATAAAGGAGATCTTAGAAAACATCAGAGAATTCATACAGGAGAAAGAACCTTACAAATGTGAATGTGACATGTGCTTTACCCAAAAATTCAATCGTCATCTTCATTTGAGAATTCATACAGGAGAGAAGCCTTACAAATATACTGAATGTGACAAATGCTTTAGCCAGAAACAATATTAGCTCTTATCAGAGAATGCACACAGTAGACACCTTCACAAATGAAGAGAATGAGAAAAATCTGTTTCCAAGGAAGATCATCTTAGAATTCATCAGAGACTACATATAGGAGAAGGAACTTATAAGTATAGTAAATGTTCAAATCCTTTACTGTTGGTTCACCACTTAAAATACATCAAAGAATGCATCCAGGATAAAAAAAAAAAAAACTTATGAATGTGATATATAAGGAAAGGACTTTACCCAAATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078546:ENSMUST00000190066:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.5),PF0013017=C1_1=WD(100=15.5),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.5),PF0013017=C1_1=WD(100=12.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATGTCTTGACTGTGCT
R:
GCACAAATTTAAACAGTTTGCATGGT
Band lengths:
342-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types