RnoINT0168439 @ rn6
Intron Retention
Gene
ENSRNOG00000051867 | Zfp600
Description
zinc finger protein 600 [Source:RGD Symbol;Acc:9286049]
Coordinates
chr11:38769679-38773607:+
Coord C1 exon
chr11:38769679-38769805
Coord A exon
chr11:38769806-38770679
Coord C2 exon
chr11:38770680-38773607
Length
874 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AATTGCACTTCTTTTTTCAGGGA
3' ss Score
9.71
Exon sequences
Seq C1 exon
GGTCAGTTAACATTCAAGGATGTCGCTGTGGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGAGCATTGTACATGGATGTGATGTTGGAGAATTACAACAATTTGTTTTATGTGG
Seq A exon
GTAAGAATACTGTTCTTATAGAATTCCTGATGCAGTCTTTGCATTTTGTTACTGTATGCTTATATAAACACTAAGACATATCTAGAGACTCCCTGAATAAGGGAAATTCTGGTTACCAACACAAGTTTTTCATTGTGTTTCCTTTACATTTCTCTCCATTCTTTGGAAGAGGATCCAGTGTTATATTCTGTAATCTCTCAAGATATCTTATCTACTTTTAATCAAAACTTCAAAATGAAAAAACAGTGGAATATTCAGAGTATGAAAATATATTGCCACACCTGTAATAATTAAAATATTCAAATTTTACTGTTGCATTAATTCTTCAGTTGTTTATAAGTTTTCAAACTGGTGAATGTTCTAAACACAGAAAGAGCTATTTGTTGTGAGAATTTTGTTGTTGCTTATTTAGTTAGTTTTTTTACCTGTTATTTCTATGTTTAGTGTTGGTACAGAATGGCCTTTATATCAGGACTTCCATGCCAATTTGGATTACATAATGAATTCATAGCTGACTAAAGCTATTCTGTATTATTCTGTCAGAAAATATAAACAAGAGATTAAAGAAACTTTTTCTTAGATGCTCCTTCAGAGAGATCTGTTCTCAGAGTCTTTTACTGCTCCATCGCCTATTCTTTTTACTTTCTGCCAAGCCGTGTTTATAAAAGAAATAGAAGGCTATTGTTTCCTATCATTTGATGACATTTGAGTTTGTTCCAAGAATCTGTGTAATGATTGTGAAACAAGAAAGACCACGTTTGTGAGCTCTATCCTTCAGAATCACTAATTTATATTAGAACATTTCAGGGGACATGGGATATTGTCTTACTCATCCACTAATCCCTGTCATCTCTAATTGCACTTCTTTTTTCAG
Seq C2 exon
GGAATCACTGCATGTGTCATAAATATGAAAACATCTTGGATCAAGGCATACAGCATATTGTCCCCCAGCATGTGAATATCCAAGTTAAGTCTGATAAATGTTATGAGTTTGGCAACACCATTCATGAATCCACCCAAAGTATACCTTATAAAACTAACCTCAGGGATACCTCTGATACATCATTAAACCTAAGCAGACATGAACCTAGAAACAACAGAGAACCTTGCAAATGTAAAAACTGTGTAAACTGTTTAAGTTCATGCTCTACCGTCAGTTTGACTCAAGAAATCCACAGAGGAAAGAAGGAATCCAATGGTACAGAGCTTGATAAGGATTTCTACTCTAAACAAAAACTCATGCTGAAACAAACCAAATGGGGAAAGAAACTTTACAAATGTAGTGAATGTGCCAAGTGCTTTGCCAAGAAATGCTGGTTTAGAAAACATCAGACAATTCATACTGGAGAGAAAATTTACAAATGTAGAGAATGTGACAAACACTTTACCCAAAAACGCAATCTTATTATTCATCAGAGGTGTCATGGAGGAAAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTTCATTCAAGTTGGTGATCTTAGAAGACACCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTAGCTACAAAAGCAGCCTTAGAAGTCATCAGATAATTCATACAGGAGAAAAACCTTACAAATGTAATGAATGTGACAAATGCTTTACCCACAAAGGAAGTCTTAGTATTCATCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTCATGAATGTGACAAATGCTTTACCCAAAAAGGCAGTCTTATTACTCATCAGAGAATTCACACTGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAAGGCTTTACCCTAAAATGCAGTCTAATCATTCATCAAATAATTCATACAGGAAAGAAAGCTTACAAATGTAGTGAATGTGACAAATGCTTTACTCTTAAATGTGATCTTAGTATTCATCAAAGAATTCATACAGGAGAGAAACTTTACAGATGTAATGAATGTGACAAATGCTTTACAAAGAAATACCGTCTTAGAAGTCATCAGACAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATCTTTTACCCTAAAATGCCATCTTAGAATTCATCAGCGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATACTTTACTCAAAAAGGCGGTCTTAGTACTCATCAGAAAATTCATGCAGGAGAAAAACCCTACAGATGTAGTAAATGTGACAAATGTTATACTCGCAAAAGTCATCTTAGTGTTCATCAACGAATTCACATAGGAGAGAAACCTTACAAATGCAATGAATGTGACAAATGCTTTACAGACAAGTATTGTCTGAAAACTCATCAGAGAATACATTCAGGAAATAAACCTTACAAATGTAGTGAATGTGATAAATCATTTGCCCTGAAAGCCAGGCTCAAGAGTCATCAGATAATTCATACAGGAGAGAAACCATACAAATGTAGTAAATGTGGCAAATACTTTACCCAAAAAGGTAGTCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTCACCCGCAAAAGCAGTCTTAATGTTCACCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTTGTGAATGTGAGAAATGCTTTTCACACAAAGGTGATTTTAGAAAACATCAGAGAATTCATATAGGGAAAAAACCTAACTAATGCTAATGTAACATATGCTTTACCCAAGAATTTGGTCTTATTCATCAAAGAATTCATACAAGAGAGAAGCCTTTCAAGTGAATGTAACAATGCTTTAACCCACAAAAGCAGTCTTAGAATTCATCAGAGAATCCATGTAAGAGAAAAATCTTCAAAATATAGTCAGTGTGACAAATTATTTGGCTAGAAACAATCTTAGCACTCATCAGAGGATCCACTTAGTAGAGAAACTTCACAAATAAATTTAATAAGAAAAATTCATTCCCAAGGAGGATCATCTTGGCATTCATCAGAGACTACATATAGGAGAGAGACCTTACAAATGTAGTAATGTGCAAATCTTTTACTGTTGGTTCAACACTTAGAATATATCAAAGAATGCATATGGGAGAAAAACCTTATTAATGTAATGTATGAGAAAAGGTCTTTACCCAAATCTTAGATCTGACAATATACCTAGACATTTATCATTAGAAAAACAATGTGCACTGGATAAAAATGTATAATGTGCTTTATGCAAACAGTATTGTTTGCAACACTTCAGACTTCACACTAGAGAATTAAATAAATGAGGAGGTCATGAAAACGTTTAAATATTTCTGAAATCTTAGAAACTACCCAGGGTTTATGGTGAGAAATTGAAAATGTGACAATGAAAGAAATTTTCATTAAAATTTTTATTTGCTCACTTTCAAATTATGTCATAATAAAAACACAATGAAGAAGCACAAAGAGTATGGAATTGTGTAAAGGTTCTTGGAGACTAAAATGATCTATTTCAAAGAGAAGCTACAAAACACATACCTCAAAGTACCTAAGAAAACTGACAAATTCAGTATACTTAATTCCAATAAAGATACTCAGACAAATTATACTTCTTAAAAGAGGATTTGAGAAAGTGAGGCACTAAGGTAGGATGCTCTTTATCCTATATAGATATGTGGTTTGCTCACAATGTCCAATATTCACAATCTGTATTATATAGTAGTTTTAAGTTTCAGGATAGCAATTGTCTTTGAGTCCCTTTGACTTTCATTTACCAACTCCTTCCCCTTAGTCCTATATGTAACTCCAATAAAGCTAATTGCTTCAACAAGTTGAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051867:ENSRNOT00000081537:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF079757=C1_4=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATGTCTTGACTGTGCT
R:
ACTGACGGTAGAGCATGAACT
Band lengths:
354-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]