RnoALTA0000168-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000051606 | AABR07009106.1
Description
zinc finger protein 457-like [Source:NCBI gene;Acc:100360380]
Coordinates
chr2:86891688-86897739:+
Coord C1 exon
chr2:86891688-86891783
Coord A exon
chr2:86896981-86896983
Coord C2 exon
chr2:86896984-86897739
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTCTCAACTCTTACTCAGCAG
3' ss Score
3.44
Exon sequences
Seq C1 exon
GTCTTGCTTCCTCTAAGCCATACCTGGTCACACTTCTGGAGCAAAGACAAGAGCTTTCAGATGTAAAGAGACAAGTGGCCAATTCTAAATACTCAG
Seq A exon
CAG
Seq C2 exon
GGGGAAAATACTATATCTGCAAAGAATATGGCAAAGTTTTTGAGGGGAAAAAAGTATTTCGAAATCACCAGATAATTCATTTAGGAATGAAGCCCAACAAGTATGAAGAATGTGGCAAGTCCGTCCGTTTTTCATCCCTACTTTCTGAACACAAAAGAATTCATGCAGGAGAAAAACCCTACAAATGTGAAGTATGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACATAAGGTAATTCATATGGGAAAGAAACCCTACAAGTGTGAAATATGTGGCAAGGCCTTCAAATTGCCATCAAGGCTTTCAAAACATGAGAAAATTCATATAGAAGAGAAGCCATACCAGTGTAAAGTATGTGGAAAGGCCTTTCGCTCTCCATCATTACTTTGTGAACATGAGAGAATTCATACAGGCGATTTACCCTGCAAGTGTGATATATGTGGCAAGGCCTTCCGTTATCCATCATTACTTTCAAAACACAAGGTAGTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051606-2-7,2-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=10.3),PF0013017=C1_1=PU(68.0=13.4),PF134651=zf-H2C2_2=PU(38.5=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAAAGACAAGAGCTTTCA
R:
TCCCCTCAAAAACTTTGCCAT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]