RnoEX0001530 @ rn6
Exon Skipping
Gene
ENSRNOG00000051606 | AABR07009106.1
Description
zinc finger protein 457-like [Source:NCBI gene;Acc:100360380]
Coordinates
chr2:86891688-86895232:+
Coord C1 exon
chr2:86891688-86891783
Coord A exon
chr2:86892252-86892305
Coord C2 exon
chr2:86895147-86895232
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGCTATTCTCATCTTCTCAGACT
3' ss Score
6.87
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTCTTGCTTCCTCTAAGCCATACCTGGTCACACTTCTGGAGCAAAGACAAGAGCTTTCAGATGTAAAGAGACAAGTGGCCAATTCTAAATACTCAG
Seq A exon
ACTCTCTGGCCCGGAGCTCCCGAATCTCTCTACACAGCTTGCTACGATCCCATG
Seq C2 exon
GTTGCTACATATGAGCCATGAGGCCTAGGTCCAGCCCATGTATGTTCTTTGATTGGTGGTTCAGACTCAGAACCCCAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051606-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000083066fB30
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCAAAGACAAGAGCT
R:
TGGATCCTTGGGGTTCTGAGT
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]